SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene55000

Length: 409 nt

UniGene Fasta

>sp_v3.0_unigene55000
ATGGGCAAGCTGCCCATGTTCGGCTGCAACGACGCCAGCCAGGTCCTGGCTGAGATCGCCAACGCCACCAAGGCCTTCCCCGACGCGTACATCCGCATGGCCGCGTTCGACAACGTGCGCCAGGTGCAGGTGGCCTCCCTGCTGGTCCACAGGCCGGCGTCCGCCACCGACTTCAGGATGCCAGAGAACCGCAGCAAGTAAGCGCAGCCAGAGTCGTTAGCCGCAGGCATTCTGCGGAACGGACTAGGAAGGAGACAAGTTCTGTGAGAGCCATTTTGGGGTAGGGAGTACTGTTTGGCGGTGGGATCAGCGCTTGCTGCGCTGCACTGCCATAGCACTGCCTACTTGCCTTTACTGCGCCATGGTACTGCATGGTTGCAGGCAAACGCACAGCACTTGTACCTGTAAA

Ace file of the UniGene sp_v3.0_unigene55000

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose-1,5-bisphosphate carboxylase small subunit n=1 Tax=Chlorella vulgaris RepID=Q9AVB6_CHLVU	-	-	5.0e-22	79%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Ribulose bisphosphate carboxylase small chain	-	-	5.341e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	2.25e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	2.25e-08	%
Sma3	Carbon fixation in photosynthetic organisms	00710	2.25e-08	%
Sma3	Metabolic pathways	01100	2.25e-08	%

Source	Gene names
Sma3	CHLREDRAFT_108283; CHLREDRAFT_82986; NbrbcS1-1; NbrbcS1-2; NbrbcS2; RBC5; RBCS; RBCS-1; RBCS-2; RBCS-2A; RBCS-2B; RBCS-2C; RBCS-3; RBCS-4; RBCS-5; RBCS-6; RBCS-7; RBCS1; rbcS; rbcS1; rbcS2;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G38430.1	Ribulose bisphosphate carboxylase (small chain) family protein chr5:15384350-15385155 REVERSE LENGTH=181	3.0e-14	50%
RefSeq	Arabidopsis thaliana	NP_198659.1	ribulose bisphosphate carboxylase small chain 1B [Arabidopsis thaliana]	4.0e-14	50%
RefSeq	Populus trichocarpa	XP_002305162.1	predicted protein [Populus trichocarpa]	5.0e-14	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPY1

Fln msg: your sequence is shorter than subject: 67 - 136

Fln protein: MGKLPMFGCNDASQVLAEIANATKAFPDAYIRMAAFDNVRQVQVASLLVHRPASATDFRMPENRSK*

Protein Length: 68

Fln nts: ATGGGCAAGCTGCCCATGTTCGGCTGCAACGACGCCAGCCAGGTCCTGGCTGAGATCGCCAACGCCACCAAGGCCTTCCCCGACGCGTACATCCGCATGGCCGCGTTCGACAACGTGCGCCAGGTGCAGGTGGCCTCCCTGCTGGTCCACAGGCCGGCGTCCGCCACCGACTTCAGGATGCCAGAGAACCGCAGCAAGTAA___GCGCAGCCAGAGTCGTTAGCCGCAGGCATTCTGCGGAACGGACTAGGAAGGAGACAAGTTCTGTGAGAGCCATTTTGGGGTAGGGAGTACTGTTTGGCGGTGGGATCAGCGCTTGCTGCGCTGCACTGCCATAGCACTGCCTACTTGCCTTTACTGCGCCATGGTACTGCATGGTTGCAGGCAAACGCACAGCACTTGTACCTGTAAA

Fln Alignment:

F51TW9001DLE7U___MGKLPMFGCNDASQVLAEIANATKAFPDAYIRMAAFDNVRQVQVASLLVHRP
C0PPY1_______________MWKLPMFGCTEASQVLNEVNECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain