SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54943

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene54943
TGGTATGAGAGGATCGATAGATATCTAATGATGCTGGGATTTACGAGAAGTGAAGCTAATCCAAACCTTTACTTTAAGGTTGAGAATGATAGACCTCTCATCTTGGTACTCTATGTGGACGATCTCTTTCTGACAGGTGCGAACCCTGTTATTCATCAATGTAAGAGGGAGTTGGTTTCCGAATTTGAGATGAAGGACCTAGGAGCGATG

Ace file of the UniGene sp_v3.0_unigene54943

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU	-	-	2.0e-10	73%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	45%
Sma3	Reverse transcriptase	-	-	9.498e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 242 aas, your sequence is shorter than subject: 70 - 542

Fln protein: WYERIDRYLMMLGFTRSEANPNLYFKVENDRPLILVLYVDDLFLTGANPVIHQCKRELVSEFEMKDLGAM

Protein Length: 71

Fln nts: TGGTATGAGAGGATCGATAGATATCTAATGATGCTGGGATTTACGAGAAGTGAAGCTAATCCAAACCTTTACTTTAAGGTTGAGAATGATAGACCTCTCATCTTGGTACTCTATGTGGACGATCTCTTTCTGACAGGTGCGAACCCTGTTATTCATCAATGTAAGAGGGAGTTGGTTTCCGAATTTGAGATGAAGGACCTAGGAGCGATG

Fln Alignment:

F5X2MQL01EH25C___WYERIDRYLMMLGFTRSEANPNLYFKVENDRPLILVLYVDDLFLTGAN-PVIHQCKRELVSEFEMKDLGA
Q9M5J7_______________WYQKFDTYILRLGFVISRADHCVYSKQVGNHFIYVVLYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain