SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54936

Length: 297 nt

UniGene Fasta

>sp_v3.0_unigene54936
GAGAAAGTGTATATTGAGCAGCCCTAGGATTTTGAGGTGCATGGGAGGGAGGGTCATGTCAGTAGGTTAAAGAAGGCGTTGTACGAACCTAAGTAGGCACCTAGAGCATGGTACTCGGGGATCGATGGATATTTGTTAGGCTTGGTCTGCACCAAGAGTGAGGTGGATTACAACTTGTACTATGTACTTGTTGGCGATGATTCACTTGTCTTAGTGCTCTATGTGGATGATCACTTTCTGACAAGATTTGAGAGGCTCACAGAGATTTGGGATGGAGATTGCAGTCTTATGTTGACA

Ace file of the UniGene sp_v3.0_unigene54936

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	1.0e-12	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Reverse transcriptase	-	-	5.83e-29	-

Source	Gene names
Sma3	VITISV_014188; VITISV_043230; pol;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 160 aas, your sequence is shorter than subject: 32 - 363

Fln protein: EKVYIEQP*DFEVHGREGHVSRLKKALYEPK*

Protein Length: 33

Fln nts: GAGAAAGTGTATATTGAGCAGCCCTAGGATTTTGAGGTGCATGGGAGGGAGGGTCATGTCAGTAGGTTAAAGAAGGCGTTGTACGAACCTAAGTAGGCACCTAGAGCATGGTACTCGGGGATCGATGGATATTTGTTAGGCTTGGTCTGCACCAAGAGTGAGGTGGATTACAACTTGTACTATGTACTTGTTGGCGATGATTCACTTGTCTTAGTGCTCTATGTGGATGATCACTTTCTGACAAGATTTGAGAGGCTCACAGAGATTTGGGATGGAGATTGCAGTCTTATGTTGACA

Fln Alignment:

F5X2MQL01CHMCT___EKVYIEQP*DFEVHGREGHVSRLKKALYEPK*APRAWYSGIDGYLL
B8LKV8_______________EEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain