SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54894

Length: 303 nt

UniGene Fasta

>sp_v3.0_unigene54894
CTGAGTGCTGAAAATCTGATCAAGTTGATGCGGCGCCGACTCGGAAATTAGAAACCTCAGGCATTGGAGCATCAGGGAGAGAGGCTGCACCTAAAGCTTATGGGCTGGGTAGACATATGATGCTACCTGTCTCTCTCCATGGACTTCCAAGNGGTGCTGCTGTGGCAAGCTGTATATATGGTGCAACAGATAGCTGGCGTAGTGCTCTATTTGCTGCAGCCTTTACGGGGTTTGCTGGTCCACTTGCTGCTATTGGGGCTATTGTGGCGGAAATTGATTACACTGGGCTTGACACGTGGATGG

Ace file of the UniGene sp_v3.0_unigene54894

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ZIP metal ion transporter-like protein [Arabidopsis thaliana] sp\|Q9C9Z1.2\|ZTP50_ARATH RecName: Full=Putative zinc transporter At3g08650 gb\|AEE74659.1\| ZIP metal ion transporter-like protein [Arabidopsis thaliana]	-	-	1.0e-16	60%
FL-Next	Isoform 2 of Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650	-	-	0.0	75%
Sma3	ZIP transporter	-	-	8.557e-08	-

Source	Gene names
Sma3	At3g08650; GSVIVT00033649001; OSJNBa0065C11.1; Os05g0316100; OsI_19433; OsJ_18031; POPTRDRAFT_577221; POPTRDRAFT_589614; RCOM_0126280; VITISV_036615;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc/iron permease	IPR003689	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08650.2	ZIP metal ion transporter family chr3:2624694-2627308 REVERSE LENGTH=619	3.0e-21	74%
RefSeq	Arabidopsis thaliana	NP_187477.1	ZIP metal ion transporter-like protein [Arabidopsis thaliana]	3.0e-21	74%
RefSeq	Populus trichocarpa	XP_002326428.1	ZIP transporter [Populus trichocarpa]	2.0e-23	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C9Z1-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 62 aas, your sequence is shorter than subject: 100 - 595

Fln protein: EC*KSDQVDAAPTRKLETSGIGASGREAAPKAYGLGRHMMLPVSLHGLPRGAAVASCIYGATDSWRSALFAAAFTGFAGPLAAIGAIVAEIDYTGLDTWM

Protein Length: 101

Fln nts: CTGAGTGCTGAAAATCTGATCAAGTTGATGCGGCGCCGACTCGGAAATTAGAAACCTCAGGCATTGGAGCATCAGGGAGAGAGGCTGCACCTAAAGCTTATGGGCTGGGTAGACATATGATGCTACCTGTCTCTCTCCATGGACTTCCAAGaGGTGCTGCTGTGGCAAGCTGTATATATGGTGCAACAGATAGCTGGCGTAGTGCTCTATTTGCTGCAGCCTTTACGGGGTTTGCTGGTCCACTTGCTGCTATTGGGGCTATTGTGGCGGAAATTGATTACACTGGGCTTGACACGTGGATGG

Fln Alignment:

F5X2MQL01CZEDZ___AAPKAYGLGRHMMLPVSLHGLPRGAAVASCIYGATDSWRSXXXXXXXXXXXXXXXXIGAIVAEIDYTGLD
Q9C9Z1-2_____________AAPNAYGLGRHMVLPVSLHGLPRGTAVASCVFGATDSWHAALAAAALIGFVGPISAIGSILAGIDYSGLD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain