SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54888

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene54888
CTGCACTGTGACATCAAGCCCCAAAACATACTTCTGGACATGAATTTTTGTCCCAAGGTTGCGGACTTTGGGTTGGCGAAGCTGGTAGATAGAGATCACTCATTCTCCTTCTCCACAATTAGAGGCACACGGGGTTACTTAGCACCGGAGTGGGCAATGAATATGCCAATCACGGCCAAGGTGGATGTTTATAGCTTTGGGATTGTTTTGTTAGAAATAGTGACCGGAAGAAGCTCGTTATCCAGTTCAACAGGACATCTGGTTCAGTGGGTCTCTGCAATGATGA

Ace file of the UniGene sp_v3.0_unigene54888

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AED93254.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	1.0e-27	68%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	52%
Sma3	Putative S-domain receptor-like protein kinase	-	-	3.549e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.082e-07	-
Sma3	[Myosin light-chain] kinase.	EC:2.7.11.18	-	9.687e-08	-

Source	Gene names
Sma3	17L07.5; AT4g32300; At1g34300; At2g19130; At4g32300; At5g35370; B1423D04.25; DUPR11.18; F10M6.60; F23M19.5; F8B4.10; GSVIVT00000338001; GSVIVT00001733001; GSVIVT00001735001; GSVIVT00002265001; GSVIVT00003755001; GSVIVT00003758001; GSVIVT00003759001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	plastoquinol--plastocyanin reductase activity	GO:0009496	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3		IPR005806	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3		IPR013596	-	-
Sma3	Cytochrome b6-f complex Fe-S subunit	IPR014909	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24080.1	Protein kinase superfamily protein chr5:8139334-8141014 REVERSE LENGTH=470	6.0e-35	68%
RefSeq	Arabidopsis thaliana	NP_568438.1	protein kinase family protein [Arabidopsis thaliana]	8.0e-35	68%
RefSeq	Populus trichocarpa	XP_002329720.1	predicted protein, partial [Populus trichocarpa]	4.0e-36	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 95 - 1145

Fln protein: LHCDIKPQNILLDMNFCPKVADFGLAKLVDRDHSFSFSTIRGTRGYLAPEWAMNMPITAKVDVYSFGIVLLEIVTGRSSLSSSTGHLVQWVSAMM

Protein Length: 96

Fln nts: CTGCACTGTGACATCAAGCCCCAAAACATACTTCTGGACATGAATTTTTGTCCCAAGGTTGCGGACTTTGGGTTGGCGAAGCTGGTAGATAGAGATCACTCATTCTCCTTCTCCACAATTAGAGGCACACGGGGTTACTTAGCACCGGAGTGGGCAATGAATATGCCAATCACGGCCAAGGTGGATGTTTATAGCTTTGGGATTGTTTTGTTAGAAATAGTGACCGGAAGAAGCTCGTTATCCAGTTCAACAGGACATCTGGTTCAGTGGGTCTCTGCAATGATGA

Fln Alignment:

F5X2MQL01CEN8N___LHCDIKPQNILLDMNFCPKVADFGLAKLVDR-DHSFSFSTIRGTRGYLAPEWAMNMPITAKVDVYSFGIVLLEIVTGRSSLSSSTG---HLVQW
Q9FEU2_______________LHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGKQPIDPTIPEGVHLVEW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain