SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54791

Length: 167 nt

UniGene Fasta

>sp_v3.0_unigene54791
TCGCTTACTGGTCATGAAGGCCCTGTCTGGCAGGTTCCCTTGTGGGTCAGCCCTCAGATCCCGTTCAGAAGCTTGTGTCCGGTGGGTGTGATAACACAGCTAAAGTTTGGAAATTTTACAATGGTTTCTGGAAGCTAGATTGTTTCCTCCTCTACAAATAGCATACG

Ace file of the UniGene sp_v3.0_unigene54791

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein transport SEC13-like protein [Solanum tuberosum]	-	-	6.0e-10	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	GSVIVT00001653001; GSVIVT00020856001; GSVIVT00033406001; PHYPADRAFT_133099; PHYPADRAFT_171600; PHYPADRAFT_192235; POPTRDRAFT_822036; POPTRDRAFT_824631; RCOM_1491200; VITISV_000787; VITISV_009154; VITISV_021485; VITISV_027966; VITISV_040760;

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01340.1	Transducin/WD40 repeat-like superfamily protein chr3:127557-128465 REVERSE LENGTH=302	2.0e-12	67%
RefSeq	Arabidopsis thaliana	NP_186783.1	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	3.0e-12	67%
RefSeq	Populus trichocarpa	XP_002321555.1	predicted protein [Populus trichocarpa]	5.0e-15	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0I2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 91 aas, your sequence is shorter than subject: 53 - 283

Fln protein: AYWS*RPCLAGSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGFWKLDCFLLYK*

Protein Length: 54

Fln nts: TCGCTTACTGGTCATGAAGGCCCTGTCTGGCAGGTTCCCTTGTGGGTCAGCCCTCAGATCCCGTTCAGAAGCTTGTGTCCGGTGGGTGTGATAACACAGCTAAAGTTTGGAAATTTTACAATGGTTTCTGGAAGCTAGATTGTTTCCTCCTCTACAAATAGCATACG

Fln Alignment:

F5X2MQL01BFZ4H___GSLVGQPSDPVQKLVSGGCDNTAKVWKFYNGFWKLDCFLLYK*HT
A9P0I2_______________GSLVGQPSDPIQKLVSGGCDNTAKVWKFYNGSWKLDCFPPLQMHT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain