SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54790

Length: 481 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54790
ATAGAGAAACGAGCTGGTTTCTCGGCCTGTGAGAGGATTTTGCAGTCGATATGGCGGAGCATCATTTTAATATTGATTCTACCCAGGTTAATCCAACTATAGAGGACTCACCGGCCATAGCGGGCTCTGCAGAGCTCGATGACTGCAACGAAACAGCTCATCTTATTAGCAACGATGCACGGTACCAAGCAGGTTTCGTTCTGGTAACTTCACTGAATAGCGTGTTTGCACTGGGATATTCAGGAATTATCATGGTTCCATTGGGGTGGATAGGAGGCACTATTGGATTAGTAACAATGCCCTTATTATCTCTGTATGCAAATCACCTCCTTGCACGTCTCCATGAAATTGGAGGCAAGCGCAACATTCGATACCGAGACCTCGCTGGTCACATCTACGGGACAAAATGAGGAAGCCGACAGGCTTTCTAAGGCTGATGTACAACAAGCTTTGGGAAGTTGGGCAATAACTGAAAGCAAAC

Ace file of the UniGene sp_v3.0_unigene54790 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0100800 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0D986_ORYSJ	-	-	5.0e-29	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Betaine/proline transporter	-	-	3.108e-13	-

Source	Gene names
Sma3	At2g36590; At2g39890; At3g55740; B1026C12.12; Bet/ProT1; Bet/ProT2; Bet/ProT3; F1I16_150; GSVIVT00018303001; HvProT; LOC_Os03g44230; LeProT1; LeProT2; LeProT3; OSJNBa0038E17.23; Os03g0644400; Os07g0100800; OsI_12791; OsI_24564; OsJ_11879; OsJ_22765; Ospro

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	L-proline transmembrane transporter activity	GO:0015193	Molecular Function	-
Sma3	proline transport	GO:0015824	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36590.1	ProT3, ATPROT3 proline transporter 3 chr2:15343122-15345167 REVERSE LENGTH=436	9.0e-34	66%
RefSeq	Arabidopsis thaliana	NP_181198.1	proline transporter 3 [Arabidopsis thaliana]	1.0e-33	66%
RefSeq	Populus trichocarpa	XP_002311196.1	proline transporter [Populus trichocarpa]	1.0e-32	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 120 - 247

Fln protein: MAEHHFNIDSTQVNPTIEDSPAIAGSAELDDCNETAHLISNDARYQAGFVLVTSLNSVFALGYSGIIMVPLGWIGGTIGLVTMPLLSLYANHLLARLHEIGGKRNIRYRDLAGHIYGTK*

Protein Length: 121

Fln nts: ATAGAGAAACGAGCTGGTTTCTCGGCCTGTGAGAGGATTTTGCAGTCGAT_-_ATGGCGGAGCATCATTTTAATATTGATTCTACCCAGGTTAATCCAACTATAGAGGACTCACCGGCCATAGCGGGCTCTGCAGAGCTCGATGACTGCAACGAAACAGCTCATCTTATTAGCAACGATGCACGGTACCAAGCAGGTTTCGTTCTGGTAACTTCACTGAATAGCGTGTTTGCACTGGGATATTCAGGAATTATCATGGTTCCATTGGGGTGGATAGGAGGCACTATTGGATTAGTAACAATGCCCTTATTATCTCTGTATGCAAATCACCTCCTTGCACGTCTCCATGAAATTGGAGGCAAGCGCAACATTCGATACCGAGACCTCGCTGGTCACATCTACGGGACAAAATGAGGAAGCCGACAGGCTTTCTAAGGCTGATGTACAACAAGCTTTGGGAAGTTGGGCAATAACTGAAAGCAAAC

Fln Alignment:

F5X2MQL01D2ED5___DDCNETAHLISNDARYQAGFVLVTSLNSVFALGYSGIIMVPLGWIGGTIGLVTMPLLSLYANHLLARLHEIGGKRNIRYRDLAGHIYG
A9P182_______________DDSRSTAHSISQDPWYQVGFILITSMNSAYVLGYSGIFMVPLGWVAGITGFIAAALISFYANYLLARLHQIDGLRHIRYRDLAGYIYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain