SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54771

Length: 335 nt

UniGene Fasta

>sp_v3.0_unigene54771
ATGGGGCTAGAAGCATGATCAGCAATGCTAACCTGCAAAAAGAGTTGTGGGCAGAAGCATTATCCACTGCTTGTTATTTGGTTAACATATCACCTTCAATAGAAATTAATTGTAAAATTCCTGATGAAGTTTGGTCAGGTCAGTCTTGTGATTATTCACATTTAAGGATATTTGGTTGTAATTCTTATGCTCTTATTCCTAAAAATCAGCGTTCAAAATTAGATCCAAAATTGAAATGTTATGTATTTGTTGGGTATGACTATGCAGTGAAAGGGTACAGGTTGTGGGATCCTACGTCACAAAGNTAGTCATTAGTAGAGATGTAACATTTCATG

Ace file of the UniGene sp_v3.0_unigene54771

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein n=1 Tax=Fragaria x ananassa RepID=C6GFP7_FRAAN	-	-	6.0e-25	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	1.536e-20	-

Source	Gene names
Sma3	H0306F03.15; H0413E07.4; LOC_Os03g27910; LOC_Os03g46450; LOC_Os10g01450; LOC_Os10g21080; LOC_Os10g34120; LOC_Os11g05840; LOC_Os11g15400; LOC_Os11g17390; LOC_Os12g01780; LOC_Os12g10890; LOC_Os12g23320; LOC_Os12g31920; LOC_Os12g34770; LOC_Os12g35740; LYC_68

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 49 aas, your sequence is shorter than subject: 102 - 407

Fln protein: GARSMISNANLQKELWAEALSTACYLVNISPSIEINCKIPDEVWSGQSCDYSHLRIFGCNSYALIPKNQRSKLDPKLKCYVFVGYDYAVKGYRLWDPTSQR*

Protein Length: 103

Fln nts: ATGGGGCTAGAAGCATGATCAGCAATGCTAACCTGCAAAAAGAGTTGTGGGCAGAAGCATTATCCACTGCTTGTTATTTGGTTAACATATCACCTTCAATAGAAATTAATTGTAAAATTCCTGATGAAGTTTGGTCAGGTCAGTCTTGTGATTATTCACATTTAAGGATATTTGGTTGTAATTCTTATGCTCTTATTCCTAAAAATCAGCGTTCAAAATTAGATCCAAAATTGAAATGTTATGTATTTGTTGGGTATGACTATGCAGTGAAAGGGTACAGGTTGTGGGATCCTACGTCACAAAGaTAGTCATTAGTAGAGATGTAACATTTCATG

Fln Alignment:

F5X2MQL01AQ624___ARSMISNANLQKELWAEALSTACYLVNISPSIEINCKIPDEVWSGQSCDYSHLRIFGCNSYALIPKNQRSKLDPKLKCYVFVGYDYAVKGYRLWDP
B8LKX7_______________ARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain