SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54766

Length: 400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54766
GCTTGTGATATTTTAGATGGGTTGATCCGTGATGGCAGGTATTAGGTTATGAATGAGTCAATGACATTATCTAGTATAAAGACCAGATCTATCTTGTACCAAAATCAAATCTCAAAAGAGAGGATCATGCAGGCAGTTCACCCTTGGCCGAACATTCGGGATATGTAAAGACCAACAGGAAGGTCAGGGAAAGATTCACTTGGAAGGGCCTCAAGTCGGATGTTCTAAGACTTGTGAGGGAATGCAACACTTGCCAACAAAACAAGACAGAGCATACCCATCCAATAGGCTTGTTGCATCCCCTCCCCATTCCAGAACAAAAGTGGGAAAGCGTTTCTATGGACTTTATCAGAGGCTTACCACCGGTGCAGGGCAAAGATTGCGTATATGTGGTGGTAGA

Ace file of the UniGene sp_v3.0_unigene54766 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	7.0e-15	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, W1: There is no M at the beginning, your sequence is longer than subject: 108 - 76

Fln protein: YKDQIYLVPKSNLKREDHAGSSPLAEHSGYVKTNRKVRERFTWKGLKSDVLRLVRECNTCQQNKTEHTHPIGLLHPLPIPEQKWESVSMDFIRGLPPVQGKDCVYVVV

Protein Length: 109

Fln nts: GCTTGTGATATTTTAGATGGGTTGATCCGTGATGGCAGGTATTAGGTTATGAATGAGTCAATGACATTATCTAGTATAAAGACCAGATCTATCTTGTACCAAAATCAAATCTCAAAAGAGAGGATCATGCAGGCAGTTCACCCTTGGCCGAACATTCGGGATATGTAAAGACCAACAGGAAGGTCAGGGAAAGATTCACTTGGAAGGGCCTCAAGTCGGATGTTCTAAGACTTGTGAGGGAATGCAACACTTGCCAACAAAACAAGACAGAGCATACCCATCCAATAGGCTTGTTGCATCCCCTCCCCATTCCAGAACAAAAGTGGGAAAGCGTTTCTATGGACTTTATCAGAGGCTTACCACCGGTGCAGGGCAAAGATTGCGTATATGTGGTGGTAGA

Fln Alignment:

F5X2MQL01BSYJD___VRERFTWKGLKSDVLRLVRECNTCQQNKTEHTXXXXXXXXXXXPEQKWESVSMDFIRGLPPVQ-GKDCVYVVV
D5ABB2_______________LQKYFYWSKLRHDVSKYIRSCSACSIAKPA-IKKQGLYTPLPTLDRPWESISMDYMSGLPSTKHGNDYVFVVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain