SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54741

Length: 399 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54741
TGATGAATGGGAGAGGATTAAAAAGATACCAGGGCGTAGCGACATTGAGTTTAAGAATACAGTGCATTCATTCCTCGTTGGAGACAAGTCCCACCCACAATCGGAGGAAATCTATGCAATGTTGGAAAGCTTAGAGTCACAAATGAAAGCAGCAGGCTATGTGCCTGACACAGACTTTGTGCTGCATGATGTTGAAAATGAGGACAAGGAACATTTTCTCTCATACCACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAACACTGACCCTGGCACACCTATCCAAATCACAAAAACCTCCGTGTGTGTGGTGACTGCCATTGTGCCGCTAAGTTCATCTCCAAGATTGTTGACCGAGAAATCATCGTGAGGGATGCAAATCGATTTCACAATTTC

Ace file of the UniGene sp_v3.0_unigene54741 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	1.96182e-44	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g08070; At1g11290; At2g27610; At3g08820; At3g23330; At3g49140; At3g57430; At3g62890; At4g02750; At4g21065; At4g30700; At4g33170; At4g33990; B1032F05.19; B1080A02.28; DYW9; EMB2758; F10A12.28; F15K20.29; F17I5.180; F17O14.29; F26K9_320; F2K15.2; F4I10.1

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	mRNA modification	GO:0016556	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	5.0e-37	55%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	6.0e-37	55%
RefSeq	Populus trichocarpa	XP_002324235.1	predicted protein [Populus trichocarpa]	1.0e-39	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Overlapping hits, possible frame ERROR between 298 and 295, STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 133 - 246

Fln protein: DEWERIKKIPGRSDIEFKNTVHSFLVGDKSHPQSEEIYAMLESLESQMKAAGYVPDTDFVLHDVENEDKEHFLSYHSEKLAIAFGLINTDPGTPIQIxxxLRVCGDCHCAAKFISKIVDREIIVRDANRFHNF

Protein Length: 134

Fln nts: TGATGAATGGGAGAGGATTAAAAAGATACCAGGGCGTAGCGACATTGAGTTTAAGAATACAGTGCATTCATTCCTCGTTGGAGACAAGTCCCACCCACAATCGGAGGAAATCTATGCAATGTTGGAAAGCTTAGAGTCACAAATGAAAGCAGCAGGCTATGTGCCTGACACAGACTTTGTGCTGCATGATGTTGAAAATGAGGACAAGGAACATTTTCTCTCATACCACAGTGAGAAGCTAGCCATTGCTTTTGGGCTTATCAACACTGACCCTGGCACACCTATCCAAATCxxxxxxxxxCTCCGTGTGTGTGGTGACTGCCATTGTGCCGCTAAGTTCATCTCCAAGATTGTTGACCGAGAAATCATCGTGAGGGATGCAAATCGATTTCACAATTTC

Fln Alignment:

F5X2MQL01BPE17___IKKIPGRSDIEFKNTVHSFLVGDKSHPQSEEIYAMLESLESQMKAAGYVPDTDFVLHDVENEDKEHFLSYHSEKLAIAFGLINTDPGTPIQITxNLRVCGDCHCAAKFISKIVDREIIVRDANRFHNF
D5AAE0_______________VQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIxNLRVCGDCHTATKFISKIVEREIIIRDANRFHHF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain