SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54729

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene54729
TGTACTGGTTGTCCTGATGGAACTATCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGCGTACATCAAAGGGAGGTGAACTAGCACGAACAGCATTGCTTCTATTTTGTCATGGACACGTGGGCGTTGCACACAG

Ace file of the UniGene sp_v3.0_unigene54729

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isocitrate dehydrogenase [NADP] n=2 Tax=Solanaceae RepID=IDHC_SOLTU	-	-	7.0e-09	92%
FL-Next	sp=Isocitrate dehydrogenase [NADP]; Pinus pinaster (Maritime pine).	-	-	0.0	92%
Sma3	Isocitrate dehydrogenase	-	-	9.197e-09	-

Source	Gene names
Sma3	At1g54340; At1g65930; DcNADP-ICDH1; DcNADP-ICDH2; EgICDH; F20D21.16; GSVIVT00002132001; GSVIVT00023479001; ICDH; ICDH-1; IDH; IDH1; LaICDH1; OJ1735_C10.15; OSJNBa0049B20.19; OSJNBa0049H05.1; OSJNBb0006H05.32; Os01g0248400; Os01g0654500; Os05g0573200; OsI_

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	isocitrate dehydrogenase (NADP+) activity	GO:0004450	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	tricarboxylic acid cycle	GO:0006099	Biological Process	-
Sma3	isocitrate metabolic process	GO:0006102	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-
Sma3	Isocitrate dehydrogenase NADP-dependent, eukaryotic-type	IPR004790	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G54340.1	ICDH isocitrate dehydrogenase chr1:20283520-20286506 FORWARD LENGTH=416	8.0e-11	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A0AR16

Fln msg: Overlapping hits, possible frame ERROR between 81 and 77, Unexpected STOP codon at 3' end. Distance to subject end: 72 aas, your sequence is shorter than subject: 30 - 417

Fln protein: CTGCPDGTIEAEAAHGTVTRHYRVHxxxR*

Protein Length: 31

Fln nts: TGTACTGGTTGTCCTGATGGAACTATCGAGGCCGAAGCAGCTCATGGCACTGTTACTCGGCATTACCGCGTACATxxxxxxxxxAGGTGAACTAGCACGAACAGCATTGCTTCTATTTTGTCATGGACACGTGGGCGTTGCACACAG

Fln Alignment:

F5X2MQL01ALV08___CPDG-TIEAEAAHGTVTRHYRVHQxGR*TSTNSIASILSWTRG
A0AR16_______________CPDGKTIEAEAAHGTVTRHYRVHQxGGETSTNSIASIFAWTRG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain