SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54721

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene54721
ATGATTGCCCATTTGTTTGGCAGAATTCTTGGACGGAGAAAAGGTGAGGGTATTACCAGATTGCTCTCACAGTTTCCACTTGGATTGCATAGACAGTTGGCTGCTTTCAAATCCCTCTTGTCCTTCATGTCGACACTCTCTTCTCTG

Ace file of the UniGene sp_v3.0_unigene54721

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL74 [Arabidopsis thaliana] sp\|Q9LZV8.1\|ATL74_ARATH RecName: Full=RING-H2 finger protein ATL74 emb\|CAB82758.1\| putative protein [Arabidopsis thaliana] gb\|AAR20739.1\| At5g01880 [Arabidopsis thaliana] gb\|AAR24751.1\| At5g01880 [Arabid	-	-	1.0e-14	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	RING-H2 finger protein ATL5A	-	-	3.05e-15	-

Source	Gene names
Sma3	ATL2A; ATL3C; ATL3I; ATL5A; ATL5B; At2g17450; At3g10910; At3g48030; At5g01880; At5g05280; F5J6.22; GSVIVT00013627001; GSVIVT00013774001; GSVIVT00029441001; GSVIVT00030120001; GSVIVT00037492001; K18I23.8; LOC_Os11g47690; Os01g0822800; OsI_04246; OsI_04302;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Hypoxia induced protein, domain	IPR007667	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01880.1	RING/U-box superfamily protein chr5:339017-339496 FORWARD LENGTH=159	4.0e-21	71%
RefSeq	Arabidopsis thaliana	NP_195808.1	RING-H2 finger protein ATL74 [Arabidopsis thaliana]	6.0e-21	71%
RefSeq	Populus trichocarpa	XP_002323073.1	predicted protein [Populus trichocarpa]	3.0e-22	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZC7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 74 aas, your sequence is shorter than subject: 48 - 246

Fln protein: *LPICLAEFLDGEKVRVLPDCSHSFHLDCIDSWLLSNPSCPSCRHSLL

Protein Length: 49

Fln nts: ATGATTGCCCATTTGTTTGGCAGAATTCTTGGACGGAGAAAAGGTGAGGGTATTACCAGATTGCTCTCACAGTTTCCACTTGGATTGCATAGACAGTTGGCTGCTTTCAAATCCCTCTTGTCCTTCATGTCGACACTCTCTTCTCTG

Fln Alignment:

F5V9AAZ02F4VIS___PICLAEFLDGEKVRVLPDCSHSFHLDCIDSWLLSNPSCPSCRHSLL
A9NZC7_______________PICLAEFMEGEKVRVLPECCHSFHADCIDTWLLSNASCPSCRHSLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain