SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54698

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene54698
CATATCCTAAGAAACAGCCCATGAGGGTATCCTCTTCAATCTGGAATGCAGATAACTGGGCTACTCAAGGTGGGCGGCTGAAGATAAACTGGAGCCATTCTCCTTTTANCTCCACTTACAAAGGCGAATGCTCCGATGGGTACATCGGAACTATATCATCTATGACTACTGCAA

Ace file of the UniGene sp_v3.0_unigene54698

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endo-transglucosylase/hydrolase 1 n=1 Tax=Bambusa oldhamii RepID=E6Y1I8_BAMOL	-	-	7.0e-14	58%
FL-Next	tr=Putative uncharacterized protein xyloglucan endotransglucosylase; Pinus pinaster (Maritime pine).	-	-	0.0	97%

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	7.338e-08	-

Source	Gene names
Sma3	GSVIVT00026115001; GSVIVT00037032001; POPTRDRAFT_779340; POPTRDRAFT_915608; PsEXT8; RCOM_0505000; RhXTH4; VITISV_024798; XET2; XTH16; XTH3;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25820.1	XTR9, XTH14, ATXTH14 xyloglucan endotransglucosylase/hydrolase 14 chr4:13130349-13131615 FORWARD LENGTH=287	2.0e-15	62%
RefSeq	Arabidopsis thaliana	NP_194312.1	xyloglucan endotransglucosylase/hydrolase protein 14 [Arabidopsis thaliana]	3.0e-15	62%
RefSeq	Populus trichocarpa	XP_002326087.1	predicted protein [Populus trichocarpa]	1.0e-15	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: F4MKM0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 17 aas, your sequence is shorter than subject: 57 - 286

Fln protein: YPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFNSxxxxxMLRWVHRNYIIYDYC

Protein Length: 58

Fln nts: CATATCCTAAGAAACAGCCCATGAGGGTATCCTCTTCAATCTGGAATGCAGATAACTGGGCTACTCAAGGTGGGCGGCTGAAGATAAACTGGAGCCATTCTCCTTTTAaCTCCxxxxxxxxxxxxxxxATGCTCCGATGGGTACATCGGAACTATATCATCTATGACTACTGCAA

Fln Alignment:

F51TW9002HTEXP___YPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFNSTYKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQRRMLRWVHRNYIIYDYC
F4MKM0_______________YPKKQPMRVSSSIWNADNWATQGGRLKINWSHSPFISTYKGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQRRMLRWVHRNYIIYDYC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain