SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54656

Length: 318 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54656
TAAGCATAACAATGACTGTGTTTTCGTGGTCATCGATAGAGTCTCTAAGATGGCCATTATGGCAGCCTGCAAGAAGAGAATCACAACAGAGGTCATTGCTAAGCTCTTCTTTGAGTGAGTGTGGGTACATTTTGGGATCCCACAGTCGATTGTCTCAGATCGTGACAACAAATTGCTAAGTGAATTTGGTCAAGTCTTTGGTCGATGCTCGATACTAAATTTACTAAGTCCACGACTTTCCACCCCCAAACTGATGGCAAAACAGAGATCGTCAACAAGATGATCTTACACATTCTACGCATGTACAACTCGAAGCAT

Ace file of the UniGene sp_v3.0_unigene54656 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	3.0e-18	46%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA76

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 187 and 187, Distance to subject end: 217 aas, your sequence is shorter than subject: 106 - 887

Fln protein: KHNNDCVFVVIDRVSKMAIMAACKKRITTEVIAKLFFE*VWVHFGIPQSIVSDRDNKLLSExxSSLWSMLDTKFTKSTTFHPQTDGKTEIVNKMILHILRMYNSKH

Protein Length: 107

Fln nts: TAAGCATAACAATGACTGTGTTTTCGTGGTCATCGATAGAGTCTCTAAGATGGCCATTATGGCAGCCTGCAAGAAGAGAATCACAACAGAGGTCATTGCTAAGCTCTTCTTTGAGTGAGTGTGGGTACATTTTGGGATCCCACAGTCGATTGTCTCAGATCGTGACAACAAATTGCTAAGTGAAxxxxxxTCAAGTCTTTGGTCGATGCTCGATACTAAATTTACTAAGTCCACGACTTTCCACCCCCAAACTGATGGCAAAACAGAGATCGTCAACAAGATGATCTTACACATTCTACGCATGTACAACTCGAAGCAT

Fln Alignment:

F51TW9002GUVJU___DCVFVVIDRVSKMAIMAACKKRITTEVIAKLFFE*VWVHFGIPQSIVSDRDNKLLSEFWSSLWSMLDTKFTKSTTFHPQTDGKTEIVNKMILHILRMYNSKH
Q2AA76_______________DCIY----HCRKMVILIPCKKTVTRVSAAQLFFEHVWKHFGLSNSIISDRDRRFLRHFWDSLWSLMDTRQKKSTIFHPQTDGQTEVVNRTIIYMLRGYNFKH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain