SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54640

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene54640
GCAAATGGAAGGCATGAAGCCTGATTCCCAAACCTTTGCCAGCACTCTCCCAGCTTGCGCCAATTTTGCAGCTCTGGAACAAGGTACAGAAATCCATGAAAAAATAATTAGAAGTGGATTTCAGTCTGACATGGTGGTCTCCAATGCTCTGATAGACATGTATGCAAAATCTGGAAGTATAAAGAAAGCACGCGAACTGTTTGATAAAATGAATCAACGAGATGTTGTGTCCTGGACGGCGATGATCGCTGGATATGCTATGCATGGCCGTGGCAAGGAGGCTCTCAAGCTCTTCGAGCAGATGAAACNCTCAGGTGTGTGTCCAAACGTGTAACC

Ace file of the UniGene sp_v3.0_unigene54640

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY	-	-	2.0e-26	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	5.258e-17	-

Source	Gene names
Sma3	At3g23330; At4g18750; B1358B12.23; F28A21.160; GSVIVT00003060001; GSVIVT00006853001; GSVIVT00006945001; GSVIVT00011403001; GSVIVT00015057001; GSVIVT00016451001; GSVIVT00017181001; GSVIVT00017247001; GSVIVT00022254001; GSVIVT00022397001; GSVIVT00029102001;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8347200-8349347 FORWARD LENGTH=715	7.0e-33	51%
RefSeq	Arabidopsis thaliana	NP_188975.3	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-33	51%
RefSeq	Populus trichocarpa	XP_002332220.1	predicted protein [Populus trichocarpa]	2.0e-30	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 99 aas, your sequence is shorter than subject: 111 - 232

Fln protein: QMEGMKPDSQTFASTLPACANFAALEQGTEIHEKIIRSGFQSDMVVSNALIDMYAKSGSIKKARELFDKMNQRDVVSWTAMIAGYAMHGRGKEALKLFEQMKHSGVCPNV*

Protein Length: 112

Fln nts: GCAAATGGAAGGCATGAAGCCTGATTCCCAAACCTTTGCCAGCACTCTCCCAGCTTGCGCCAATTTTGCAGCTCTGGAACAAGGTACAGAAATCCATGAAAAAATAATTAGAAGTGGATTTCAGTCTGACATGGTGGTCTCCAATGCTCTGATAGACATGTATGCAAAATCTGGAAGTATAAAGAAAGCACGCGAACTGTTTGATAAAATGAATCAACGAGATGTTGTGTCCTGGACGGCGATGATCGCTGGATATGCTATGCATGGCCGTGGCAAGGAGGCTCTCAAGCTCTTCGAGCAGATGAAACaCTCAGGTGTGTGTCCAAACGTGTAACC

Fln Alignment:

F51TW9002HGXBX___QMEGMKPDSQTFASTLPACANFAALEQGTEIHEKIIRSGFQSDMVVSNALIDMYAKSGSIKKARELFDKMNQRDVVSWTAMIAGYAMHGRGKEALKLFEQMKHSGVCPN
D5AB53_______________QLTKVKPNAETFPSVLPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain