SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54585

Length: 408 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54585
TTGGAAGTCAGTGAGCGCTTTAATTAGCACCAATTATAACATCTGGAAACAGAGAATGTTGACCATTTTTGTAATAAAGGCGTCTTGACCAGCTTGTTTTAGGCAAAGAGCTCAGTCCTGGTACAACTGGCGCGATCAAAATAAGTTTGATGATTGAAATCGAGAGGTCGTTATGCTTCTCAAACTCTTTGTGACTGATGATCAGTTACTACAGATTCCTTTCGGCAAGACAGCGGCTGAAATCTAGCAACATTTGAAGGAATTGCATGAGATATCTGACAAGAGCAGAGCTTTCTTTCTAAATAATCAGTGGTTCTCCATCATGATGGATGAACATATGTCTTTACAGGAACACTTTAACAAGATTAAAGACATTTGAGGTCAGCTTGAAGCCATTGGTCGGACCAT

Ace file of the UniGene sp_v3.0_unigene54585 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA	-	-	2.0e-05	26%
FL-Next	tr=Gag-Pol; Ipomoea batatas (Sweet potato) (Convolvulus batatas).	-	-	0.0	26%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q6BCY1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1163 aas, atg_distance in limit (1-15): atg_distance = 4, No stop codon before M and low homology subject, your sequence is shorter than subject: 108 - 1298

Fln protein: MLTIFVIKAS*PACFRQRAQSWYNWRDQNKFDD*NREVVMLLKLFVTDDQLLQIPFGKTAAEI*QHLKELHEISDKSRAFFLNNQWFSIMMDEHMSLQEHFNKIKDI*

Protein Length: 109

Fln nts: TTGGAAGTCAGTGAGCGCTTTAATTAGCACCAATTATAACATCTGGAAACAGAGA_-_ATGTTGACCATTTTTGTAATAAAGGCGTCTTGACCAGCTTGTTTTAGGCAAAGAGCTCAGTCCTGGTACAACTGGCGCGATCAAAATAAGTTTGATGATTGAAATCGAGAGGTCGTTATGCTTCTCAAACTCTTTGTGACTGATGATCAGTTACTACAGATTCCTTTCGGCAAGACAGCGGCTGAAATCTAGCAACATTTGAAGGAATTGCATGAGATATCTGACAAGAGCAGAGCTTTCTTTCTAAATAATCAGTGGTTCTCCATCATGATGGATGAACATATGTCTTTACAGGAACACTTTAACAAGATTAAAGACATTTGAGGTCAGCTTGAAGCCATTGGTCGGACCAT

Fln Alignment:

F51TW9002H6W0T___NYNIWKQRMLTIFVIKAS*PACFRQRAQSWYNWRDQNKFDD*NREVVMLLKLFVTDDQLLQIPFGKTAAEI*QHLKELHEISDKSRAFFLNNQWFSIMMDEHMSLQEHFNKIKDI*GQLEAI
Q6BCY1_______________NFSLWKLKVKAIL----RKDNCLAAISERPVDFTDDKKWSEMNEDAMADLYLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNTLNTLFSQLTSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain