SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54582

Length: 481 nt

UniGene Fasta

>sp_v3.0_unigene54582
GACTTTGAAGAAACTCAACACCTTCTATGTGGCCTCCTGCAATTTGATAGGAGAAATCCCCCTTTTCGTCTTTAATTTCACAGAGCTGAGCCTCCTGGATCTCTCCAATAACAACCTCAATGGATCCATTCCCAAGGAAATCTCCAACCTGAAGAAGCTCTCTTATCTGGAGCTCTACGGTAACGCTCTCAGCGGGAGTATTCCTCCAGAATTGGGGGATCTCAGGTCATTGCAAGACTTGGATGCGTCGGACAACAAGCTTACTGGCAGCATTCCACAAGAGCTCGGGAATTTGAAGAATGTAACATATATCCAGTTCGATGACAATAACCTTTGCGGCCAAATTCCTGAAAGCTTCGCGGATTTGCCGCTTCTGGAAGGGTTATCAGTATATCGGAACAATCTTACAGGACAATTACCGCAGAAGCTCGGCAGTCTCTCTAAATTCAACATGCTGGAAGTGTCGGAGAATCGGCTCAAT

Ace file of the UniGene sp_v3.0_unigene54582

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R6R5_RICCO	-	-	1.0e-29	47%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	42%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	9.298e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.755e-11	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	3.387e-09	-

Source	Gene names
Sma3	AT1G75820; AT5G49660; At1g09970; At1g09970/F21M12.36; At1g75820; At5g25910; At5g49660; At5g49660/MNI5_4; CLAVATA-1; CLAVATA1; CLV; CLV1; Cf-5; EILP; F21M12.36; GSVIVT00002006001; GSVIVT00005619001; GSVIVT00010645001; GSVIVT00015033001; GSVIVT00017148001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein chr5:20161401-20164534 REVERSE LENGTH=966	4.0e-33	48%
RefSeq	Arabidopsis thaliana	NP_199777.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	6.0e-33	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 719 aas, your sequence is shorter than subject: 160 - 1145

Fln protein: TLKKLNTFYVASCNLIGEIPLFVFNFTELSLLDLSNNNLNGSIPKEISNLKKLSYLELYGNALSGSIPPELGDLRSLQDLDASDNKLTGSIPQELGNLKNVTYIQFDDNNLCGQIPESFADLPLLEGLSVYRNNLTGQLPQKLGSLSKFNMLEVSENRLN

Protein Length: 161

Fln nts: GACTTTGAAGAAACTCAACACCTTCTATGTGGCCTCCTGCAATTTGATAGGAGAAATCCCCCTTTTCGTCTTTAATTTCACAGAGCTGAGCCTCCTGGATCTCTCCAATAACAACCTCAATGGATCCATTCCCAAGGAAATCTCCAACCTGAAGAAGCTCTCTTATCTGGAGCTCTACGGTAACGCTCTCAGCGGGAGTATTCCTCCAGAATTGGGGGATCTCAGGTCATTGCAAGACTTGGATGCGTCGGACAACAAGCTTACTGGCAGCATTCCACAAGAGCTCGGGAATTTGAAGAATGTAACATATATCCAGTTCGATGACAATAACCTTTGCGGCCAAATTCCTGAAAGCTTCGCGGATTTGCCGCTTCTGGAAGGGTTATCAGTATATCGGAACAATCTTACAGGACAATTACCGCAGAAGCTCGGCAGTCTCTCTAAATTCAACATGCTGGAAGTGTCGGAGAATCGGCTCAAT

Fln Alignment:

F51TW9002HGH9E___TLKKLNTFYVASCNLIGEIPLFVFNFTEXXXXXXXXXXXXGSIPKEISNLKKLSYLELYGNALSGSIPPELGDLRSLQDLDASDNKLTGSIPQELGNLKNVTYIQFDDNNLCGQIPESFADLPLLEGLSVYRNNLTGQLPQKLGSLSKFNMLEVSENRL
Q9FEU2_______________SLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRLSGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLKNLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain