SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54336

Length: 316 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54336
TCCCCTGGATTTTGCTCCGCCAGGCGTAAATCCACCGCCTGCACTTCCAGATTATATAGAGCCGACGAAAACCATTTTCACAACCATTTCCAATGGTTTCAAAGTTGCATCTGAAGCCTCTTCGACGCTCACGAGAGGGGCTAGTTCTTTCTCTGCTGGTGGCGCTGGTAAAGGAATGCACTTTCGATTATATCTACGGGTTTTGAATGAATACCGACAAGTGCAAACATTTTCTGCTTTCAACAGTGTGTACAATGATAATGGCCTTTTTGGCATTCAATAAAGCAACTGCGGGGATTCAACTTCAAGGGAACGA

Ace file of the UniGene sp_v3.0_unigene54336 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial processing peptidase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RQC8_RICCO	-	-	4.0e-08	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Sma3	Mitochondrial processing peptidase.	EC:3.4.24.64	-	1.024e-13	-

Source	Gene names
Sma3	At1g51980; At3g16480; F5F19.4; GSVIVT00003453001; GSVIVT00008665001; GSVIVT00016635001; GSVIVT00034277001; MDC8.11; MPP; OSJNBa0075A10.17; Os01g0739000; Os05g0524300; OsI_03671; OsI_20678; OsJ_03392; OsJ_19261; P0638D12.13; PHYPADRAFT_207121; PHYPADRAFT_2

Source	GOs	Term	Type	Identity
Sma3	mitochondrial outer membrane	GO:0005741	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	-
Sma3	mitochondrial intermembrane space	GO:0005758	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ubiquinol-cytochrome-c reductase activity	GO:0008121	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Peptidase M16, zinc-binding site	IPR001431	-	-
Sma3	Ribosomal protein L22, bacterial-type	IPR005727	-	-
Sma3	Peptidase M16, C-terminal	IPR007863	-	-
Sma3	Peptidase M16, core	IPR011237	-	-
Sma3	Peptidase M16, N-terminal	IPR011765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXV7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 200 aas, your sequence is shorter than subject: 94 - 361

Fln protein: PLDFAPPGVNPPPALPDYIEPTKTIFTTISNGFKVASEASSTLTRGASSFSAGGAGKGMHFRLYLRVLNEYRQVQTFSAFNSVYNDNGLFGIQ*

Protein Length: 95

Fln nts: TCCCCTGGATTTTGCTCCGCCAGGCGTAAATCCACCGCCTGCACTTCCAGATTATATAGAGCCGACGAAAACCATTTTCACAACCATTTCCAATGGTTTCAAAGTTGCATCTGAAGCCTCTTCGACGCTCACGAGAGGGGCTAGTTCTTTCTCTGCTGGTGGCGCTGGTAAAGGAATGCACTTTCGATTATATCTACGGGTTTTGAATGAATACCGACAAGTGCAAACATTTTCTGCTTTCAACAGTGTGTACAATGATAATGGCCTTTTTGGCATTCAATAAAGCAACTGCGGGGATTCAACTTCAAGGGAACGA

Fln Alignment:

F51TW9001ENCXF___PLDFAXXXXXXXXXXPDYIEPTKTIFTTISNGFKVASEASSTLTRXXXXXXXXXXXXGMHFRLYLRVLNEYRQVQTFSAFNSVYNDNGLFGIQ*SNCGDSTSRER
A9NXV7_______________PLDYPLPGVKPPPTLPDYIEPTKTIFTTVPNGLKVASEASATLMGGAGSFSAGGTGKGMYYRLYLRVLNEYRQVQSFSAFNSMYNDNGRFGNH-ATAGISTSRER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain