SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene54164

Length: 492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene54164
GTTTAACAAGGACCTGCTTTGAATGCAGTACTTGAACGGCAGAGATCTGCAGAGATTAATGAAGCAGTAAGAATGAGTACTTCAAGTCTTGGGACAAGGCAAGGCAGTAAGAGTGTTAAACCAATTGTCCATGTCAGTGGGGATCGGCAATCCTCACGAGCTGGCACAAGAACTGTAGGGCATAGAGGAAATCAACCAAAAGTTACAAAGCAGGCTGCTGCTGTAGCTGCCCAGGATCTTGCAGTTCAAGGACAGGCTTTGTTTAATCTGAAGGATTCAAACAAGGAAGACCGAGAAAGATTTGTTCCACGTAAGCACAAATTTGAAGAGCCACGTCCGGAGCAAATTCAAGAAATTGAGAATGATATCATGAGGTATTTTAGAGAAGATTTGCATCGAAGACTTTTAAGTCCAGACTTCAAGAAACAAGTAGATGGTCTGGAAATGTTGCAAAAGGCTATACCTTCTCATGGTAAAGAAATGGTTGAAATT

Ace file of the UniGene sp_v3.0_unigene54164 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Microtubule organization protein n=2 Tax=Populus trichocarpa RepID=B9GIF2_POPTR	-	-	2.0e-23	44%
FL-Next	sp=Protein MOR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Sma3	Microtubule organization protein	-	-	9.88e-10	-

Source	Gene names
Sma3	At2g35630; B1148D12.6-1; GSVIVT00008514001; GSVIVT00010191001; MOR1; MOR2; MtrDRAFT_AC183502g21v2; OSJNBa0085D07.49-1; Os01g0816400; OsJ_03864; PHYPADRAFT_106216; POPTRDRAFT_550419; POPTRDRAFT_727336; RCOM_0214170;

Source	GOs	Term	Type	Identity
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	preprophase band	GO:0009574	Cellular Component	-
Sma3	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	VHS	IPR002014	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35630.1	MOR1, GEM1 ARM repeat superfamily protein chr2:14966828-14980361 FORWARD LENGTH=1978	2.0e-26	51%
RefSeq	Arabidopsis thaliana	NP_565811.2	microtubule organization 1 protein [Arabidopsis thaliana]	2.0e-26	51%
RefSeq	Populus trichocarpa	XP_002300496.1	microtubule organization protein [Populus trichocarpa]	8.0e-28	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94FN2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 769 aas, your sequence is shorter than subject: 164 - 1978

Fln protein: V*QGPALNAVLERQRSAEINEAVRMSTSSLGTRQGSKSVKPIVHVSGDRQSSRAGTRTVGHRGNQPKVTKQAAAVAAQDLAVQGQALFNLKDSNKEDRERFVPRKHKFEEPRPEQIQEIENDIMRYFREDLHRRLLSPDFKKQVDGLEMLQKAIPSHGKEMVEI

Protein Length: 165

Fln nts: GTTTAACAAGGACCTGCTTTGAATGCAGTACTTGAACGGCAGAGATCTGCAGAGATTAATGAAGCAGTAAGAATGAGTACTTCAAGTCTTGGGACAAGGCAAGGCAGTAAGAGTGTTAAACCAATTGTCCATGTCAGTGGGGATCGGCAATCCTCACGAGCTGGCACAAGAACTGTAGGGCATAGAGGAAATCAACCAAAAGTTACAAAGCAGGCTGCTGCTGTAGCTGCCCAGGATCTTGCAGTTCAAGGACAGGCTTTGTTTAATCTGAAGGATTCAAACAAGGAAGACCGAGAAAGATTTGTTCCACGTAAGCACAAATTTGAAGAGCCACGTCCGGAGCAAATTCAAGAAATTGAGAATGATATCATGAGGTATTTTAGAGAAGATTTGCATCGAAGACTTTTAAGTCCAGACTTCAAGAAACAAGTAGATGGTCTGGAAATGTTGCAAAAGGCTATACCTTCTCATGGTAAAGAAATGGTTGAAATT

Fln Alignment:

F5X2MQL01BHMZ8___QGPALNAVLERQRSAEINEAVRMSTSSLGTRQGSKSVKPIVHVSGDRQSSRAGTRTVGHRGNQPKVTKXXXXXXXXXXXXXXXXLFNLKDSNKEDRERFVPRKHKFXXXXXXXXXXXENDIMRYFREDLHRRLLSPDFKKQVDGLEMLQKAIPSHGKEMVEI
Q94FN2_______________QGPALALVLEKVRPGFVQEPFESSKAMAGPV--SKGVTKI------SKSTSNGTLKQGNRSRAVPTKGSSQITSVHDIAIQSQALLNTKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain