SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53992

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene53992
CACCTCCATGAAGCACAAGAATTTATCAACAACATGCCAATAACACCTGATGCTGCTGTGTGGAGTTGTTTACTTAGTGCCTGTAGGATGCATAACAATTTACAATTGGGAGAATACACAGCAGAACGAATTTTTCGGTTGGGCTGTAAAGATGCTGCACCTTATGTGCTTCTATCCAAACATCTATGCTACAGCTGGCAGGTGGGATGACATTAAAAG

Ace file of the UniGene sp_v3.0_unigene53992

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15510.1	ATECB2, ECB2, VAC1 Tetratricopeptide repeat (TPR)-like superfamily protein chr1:5329111-5331711 FORWARD LENGTH=866	2.0e-14	52%
RefSeq	Arabidopsis thaliana	NP_173004.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-14	52%
RefSeq	Populus trichocarpa	XP_002310520.1	predicted protein [Populus trichocarpa]	3.0e-15	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Separated hits, possible frame ERROR between 177 and 179, Distance to subject end: 32 aas, your sequence is shorter than subject: 73 - 644

Fln protein: HLHEAQEFINNMPITPDAAVWSCLLSACRMHNNLQLGEYTAERIFRLGCKDAAPYVLLxxNIYATAGRWDDIK

Protein Length: 74

Fln nts: CACCTCCATGAAGCACAAGAATTTATCAACAACATGCCAATAACACCTGATGCTGCTGTGTGGAGTTGTTTACTTAGTGCCTGTAGGATGCATAACAATTTACAATTGGGAGAATACACAGCAGAACGAATTTTTCGGTTGGGCTGTAAAGATGCTGCACCTTATGTGCTTCTATCxxxAAACATCTATGCTACAGCTGGCAGGTGGGATGACATTAAAAG

Fln Alignment:

F585NNT02FP4CU___EAQEFINNMPITPDAAVWSCLLSACRMHNNLQLGEYTAERIFRLGCKDAAPYVLLSxNIYATAGRWDDI
B8LLJ0_______________EANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSxNIYAAAGRWDDI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain