SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53946

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene53946
ATGGGGATTCATGGAACTGGCAAAGCTTCTGGCTTCACAGGGCCTCGCCGTTTCGTATATAACGACTCCAGGGAACGCCAAACGGCTCGACCCTCAGGTCCAGGGATCGAATCTGGACATCAGGCTGGTGTCCCTACCGATGCCTTCCATCGAGGGACTGCCTCCGGAAATCGAAAGCTCCGACAACGTTCCCCATGATGTGTTCCAAAAACTGGTCGGTTCGTCCGGCAAGTTAG

Ace file of the UniGene sp_v3.0_unigene53946

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glycosyltransferase-like protein [Arabidopsis thaliana] sp\|Q9LTA3.1\|U91C1_ARATH RecName: Full=UDP-glycosyltransferase 91C1 dbj\|BAA98157.1\| anthocyanidin-3-glucoside rhamnosyltransferase-like [Arabidopsis thaliana] dbj\|BAC41828.1\| putative anthocyanidi	-	-	3.0e-08	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49690.1	UDP-Glycosyltransferase superfamily protein chr5:20189968-20191350 REVERSE LENGTH=460	6.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_199780.1	UDP-glycosyltransferase-like protein [Arabidopsis thaliana]	8.0e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPJ2

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 78 - 498

Fln protein: WGFMELAKLLASQGLAVSYITTPGNAKRLDPQVQGSNLDIRLVSLPMPSIEGLPPEIESSDNVPHDVFQKLVGSSGKL

Protein Length: 79

Fln nts: ATGGGGATTCATGGAACTGGCAAAGCTTCTGGCTTCACAGGGCCTCGCCGTTTCGTATATAACGACTCCAGGGAACGCCAAACGGCTCGACCCTCAGGTCCAGGGATCGAATCTGGACATCAGGCTGGTGTCCCTACCGATGCCTTCCATCGAGGGACTGCCTCCGGAAATCGAAAGCTCCGACAACGTTCCCCATGATGTGTTCCAAAAACTGGTCGGTTCGTCCGGCAAGTTAG

Fln Alignment:

F585NNT02GZV0U___FMELAKLLASQGLAVSYITTPGNAKRLDPQVQGSNLDIRLVSLPMPSIEGLPPEIESSDNVPHDVFQKLVGSSGKL
B8LPJ2_______________FMELAKLLASQGLTVSYITTPGNAKRLEPQFQGSNLDIRLVTLPMPSVEGLPPGVESSDNVPYNFFEKLVDSSHKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain