SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53942

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene53942
GAGAATCAATTATTCATTGCAAAGCATGTCGCTCGTTCCTCGCTTCTTTGGCAAACGATCCATTGTATTCGATCCGTTCTCACTGGAATTATGGGATCCTTTTGAATCTGAAAATTCCTCATTTTCTGGGGACATAGGGCACAGTGCAAGGAATGACGCAACAGCCATAGCCAACACTCAGCTCGACTGGAAGGAAACTCCTGACGCGCACATTTTCAAGGCCGATCTTCCAGGCCTGAAGAAAG

Ace file of the UniGene sp_v3.0_unigene53942

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	4.0e-19	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Chaperone	-	-	2.976e-10	-

Source	Gene names
Sma3	At5g59720; CJHSP17; HS6871; HSP; HSP17.3; HSP17.3-B; HSP17.5-E; HSP17.5-M; HSP18; HSP18.1; HSP18.2; HSP18.5-C; Hsp1; LOC_Os01g04370; LOC_Os01g04380; LOC_Os03g16020; MTH12.7; MtrDRAFT_AC149642g18v2; OJ1364E02.10; Os01g0136100; Os01g0136200; Os03g0266900; O

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59720.1	HSP18.2 heat shock protein 18.2 chr5:24062632-24063117 FORWARD LENGTH=161	2.0e-23	58%
RefSeq	Arabidopsis thaliana	NP_200780.1	heat shock protein 18.2 [Arabidopsis thaliana]	2.0e-23	58%
RefSeq	Populus trichocarpa	XP_002315187.1	predicted protein [Populus trichocarpa]	3.0e-23	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS87

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 73 - 158

Fln protein: MSLVPRFFGKRSIVFDPFSLELWDPFESENSSFSGDIGHSARNDATAIANTQLDWKETPDAHIFKADLPGLKK

Protein Length: 74

Fln nts: GAGAATCAATTATTCATTGCAAAGC_-_ATGTCGCTCGTTCCTCGCTTCTTTGGCAAACGATCCATTGTATTCGATCCGTTCTCACTGGAATTATGGGATCCTTTTGAATCTGAAAATTCCTCATTTTCTGGGGACATAGGGCACAGTGCAAGGAATGACGCAACAGCCATAGCCAACACTCAGCTCGACTGGAAGGAAACTCCTGACGCGCACATTTTCAAGGCCGATCTTCCAGGCCTGAAGAAAG

Fln Alignment:

F585NNT02G9NM2___MSLVPRFFGKRSIVFDPFSLELWDPFESENSSFSGDIGHSARNDATAIANTQLDWKETPDAHIFKADLPGLKK
A9NS87_______________MSLVPRFFGRRSSVFDPFSLDLWDPFESGNSPFLGDIGNLARNDATAIANTQLDWKETSDAHIFKADLPGLKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain