SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53854

Length: 402 nt

UniGene Fasta

>sp_v3.0_unigene53854
ATGGGGAGTTCAAGGTCTGTGTTTCGATTGGGCTCCAAAATGGAAGCAATCAAACAACACTCATTAATGGTATTTGTAATGGTGGGGTTAACGATAATGTGGATATGCCCATGGACATGGTGCTTTTTATGTCCCCCCTGGTTACAATGCTCCCCAACAGGGCTTTGATTTTACCAAGTTCATATCACTCAAGGAGACTATGAGGGTACAGCTGTTATTGTCTCTTGGATTACACCATCAGAGCCTGGAACTAGTATTGTCCTGTATGGCCCCGAGGAGTCCAAGTACACATATGCAGCATATGGTATTATGATCAAATATATGTATTATAACTATACATCTGGATTTATTCATCATTGCACTCTGAGGAATCTAGAGGTAAGTCTTGCAATATAGTTTTCC

Ace file of the UniGene sp_v3.0_unigene53854

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purple acid phosphatase [Ipomoea batatas]	-	-	1.0e-21	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Purple acid phosphatase	-	-	3.66902e-41	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	1.762e-33	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		1.762e-33	%
Sma3	Riboflavin metabolism	00740		1.762e-33	%

Source	Gene names
Sma3	ACPEPP; AP1; AT11; At2g16430; At5g34850; F16F14.7; GSVIVT00014522001; GSVIVT00014523001; GSVIVT00032768001; GSVIVT00035928001; GSVIVT00035929001; GSVIVT00035931001; LOC_Os12g44020; LOC_Os12g44050; Os01g0776600; Os06g0643900; Os12g0637100; Os12g0637400; Os

Source	GOs	Term	Type	Identity
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G34850.1	ATPAP26, PAP26 purple acid phosphatase 26 chr5:13108475-13111217 REVERSE LENGTH=475	1.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_198334.1	purple acid phosphatase 26 [Arabidopsis thaliana]	2.0e-22	58%
RefSeq	Populus trichocarpa	XP_002307690.1	predicted protein [Populus trichocarpa]	1.0e-24	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 348 aas, your sequence is shorter than subject: 132 - 517

Fln protein: MGSSRSVFRLGSKMEAIKQHSLMVFVMVGLTIMWICPWTWCFLCPPWLQCSPTGL*FYQVHITQGDYEGTAVIVSWITPSEPGTSIVLYGPEESKYTYAAYGIMIKYMYYNYTSGFIHHCTLRNLEVSLAI*

Protein Length: 133

Fln nts: ATGGGGAGTTCAAGGTCTGTGTTTCGATTGGGCTCCAAAATGGAAGCAATCAAACAACACTCATTAATGGTATTTGTAATGGTGGGGTTAACGATAATGTGGATATGCCCATGGACATGGTGCTTTTTATGTCCCCCCTGGTTACAATGCTCCCCAACAGGGCTTTGATTTTACCAAGTTCATATCACTCAAGGAGACTATGAGGGTACAGCTGTTATTGTCTCTTGGATTACACCATCAGAGCCTGGAACTAGTATTGTCCTGTATGGCCCCGAGGAGTCCAAGTACACATATGCAGCATATGGTATTATGATCAAATATATGTATTATAACTATACATCTGGATTTATTCATCATTGCACTCTGAGGAATCTAGAGGTAAGTCTTGCAATATAGTTTTCC

Fln Alignment:

F585NNT02FF96Z___QVHITQGDYEGTAVIVSWITPSEPGTSIVLYGPEESKYTYAAYGIMIKYMYYNYTSGFIHHCTLRNLE
A9NVR5_______________QVHITQGDYEGKAVIVSWVTSAEPGSSEVFYDTVEHNYKYRAKGNITTYTFFNYTSGFIHHCLIIDLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain