SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53831

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene53831
TTATGGACCTTCTCTTCCACGGAGCTCAGGTTTTTGCACAAGACATGCTCACAAATTTAGAGAGGTACAACAATGCACTCTTCTTTCTATCAAGACAGGAGGCTGTTCTGAAGATTGTGCATATTGTCCCCAGTCATCTCGATATGACACTGGGGTGAAAGGCCAAAAGCTACATGAATAAAGATGCAGTGATTGAGTCAGC

Ace file of the UniGene sp_v3.0_unigene53831

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Biotin synthase n=2 Tax=Glycine max RepID=Q2XPR6_SOYBN	-	-	3.0e-17	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Biotin synthase	-	-	1.717e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Biotin synthase.	EC:2.8.1.6	-	1.861e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Biotin metabolism	00780		1.861e-12	%
Sma3	Metabolic pathways	01100		1.861e-12	%

Source	Gene names
Sma3	At2g43360; BIO2; BIOB; GSVIVT00001917001; MICPUN_97893; Os08g0540100; OsI_30080; OsJ_28119; P0666G10.131; PHATRDRAFT_21296; PHYPADRAFT_109948; PHYPADRAFT_163990; POPTRDRAFT_741439; POPTRDRAFT_869451; POPTRDRAFT_949299; RCOM_0574610; T01O24.10; THAPSDRAFT_

Source	GOs	Term	Type	Identity
Sma3	biotin synthase activity	GO:0004076	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	biotin biosynthetic process	GO:0009102	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Biotin synthase	IPR002684	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Biotin/thiamin synthesis-associated protein	IPR010722	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43360.1	BIO2, BIOB Radical SAM superfamily protein chr2:18010918-18013129 REVERSE LENGTH=378	3.0e-22	86%
RefSeq	Arabidopsis thaliana	NP_181864.1	biotin synthase [Arabidopsis thaliana]	5.0e-22	86%
RefSeq	Populus trichocarpa	XP_002327854.1	predicted protein [Populus trichocarpa]	1.0e-22	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXW3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 263 aas, your sequence is shorter than subject: 60 - 401

Fln protein: YGPSLPRSSGFCTRHAHKFREVQQCTLLSIKTGGCSEDCAYCPQSSRYDTGVKGQKLHE*

Protein Length: 61

Fln nts: TTATGGACCTTCTCTTCCACGGAGCTCAGGTTTTTGCACAAGACATGCTCACAAATTTAGAGAGGTACAACAATGCACTCTTCTTTCTATCAAGACAGGAGGCTGTTCTGAAGATTGTGCATATTGTCCCCAGTCATCTCGATATGACACTGGGGTGAAAGGCCAAAAGCTACATGAATAAAGATGCAGTGATTGAGTCAGC

Fln Alignment:

F585NNT02F7HQD___RHAHKFREVQQCTLLSIKTGGCSEDCAYCPQSSRYDTGVKGQKL
A9NXW3_______________RHAHKFREVQQCTLLSIKTGGCSEDCAYCPQSSRYDTGVKGQKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain