SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53795

Length: 431 nt

UniGene Fasta

>sp_v3.0_unigene53795
ATGGGGAGTCGGAGATCGATCTTGAAATCCAAACACTGAGAGACTAGAGTGTTGTTTTTCTCTATTTATTCCAATCACATATTGCAGTAATTCATTACTAGTTGAAAATGTCGATAATTCCCAGCTTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAGATCGACTGGAAGGAAACGCCAGAAGCGCACATTTTCAAAGCTGATCTTCCAGGTTTGAAGAAAGAGGAGGTAAAAATAGAGTTGGAAGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGAAGGTTACATAATGTGTAGATGTGTGTAGGAAGCTGTTCTCCAGTTGATAG

Ace file of the UniGene sp_v3.0_unigene53795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	9.0e-29	85%
FL-Next	tr=Low molecular weight heat-shock protein; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	88%
Sma3	Heat-shock protein, putative	-	-	9.149e-31	-

Source	Gene names
Sma3	ApHSP16.5; At1g07400; At1g07400/F22G5_20; At1g53540; At1g59860; At2g29500; At3g46230; At5g59720; BcHSP; BcHSP17.6; CJHSP17; F12M12_200; F22G10.20; F23H11.18; GSVIVT00001312001; GSVIVT00018308001; GSVIVT00018355001; GSVIVT00018357001; GSVIVT00018362001; GS

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59720.1	HSP18.2 heat shock protein 18.2 chr5:24062632-24063117 FORWARD LENGTH=161	4.0e-21	54%
RefSeq	Arabidopsis thaliana	NP_200780.1	heat shock protein 18.2 [Arabidopsis thaliana]	5.0e-21	54%
RefSeq	Populus trichocarpa	XP_002315187.1	predicted protein [Populus trichocarpa]	2.0e-25	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40936

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 50 aas, your sequence is shorter than subject: 90 - 161

Fln protein: MSIIPSFFGQRSFDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTQIDWKETPEAHIFKADLPGLKKEEVKIELEEDVIVDLQWP*

Protein Length: 91

Fln nts: ATGGGGAGTCGGAGATCGATCTTGAAATCCAAACACTGAGAGACTAGAGTGTTGTTTTTCTCTATTTATTCCAATCACATATTGCAGTAATTCATTACTAGTTGAAA_-_ATGTCGATAATTCCCAGCTTTTTTGGCCAGAGGTCATTCGATCCCTTCTCCTTGGATGTATGGGATCCTTTCCAAGCATTCACAGATTTGGCCAGCGGGGGACCATCGGGGCAATTTGTAAGGGAGACTTCTGCCATAGCCAATACTCAGATCGACTGGAAGGAAACGCCAGAAGCGCACATTTTCAAAGCTGATCTTCCAGGTTTGAAGAAAGAGGAGGTAAAAATAGAGTTGGAAGAGGATGTCATAGTAGACCTGCAGTGGCCGTAGAGGAAGGTTACATAATGTGTAGATGTGTGTAGGAAGCTGTTCTCCAGTTGATAG

Fln Alignment:

F585NNT02IO3US___MSIIPSFFGQRS---FDPFSLDVWDPFQAFTDLASGGPSGQFVRETSAIANTQIDWKETPEAHIFKADLPG
Q40936_______________MSIIPSFFGRRSSSAFDPFSLDVWDPFRAFTDLAAGGPSGQFVNEASAIANTQIDWKETPEAHIFKADLPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain