SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53765

Length: 188 nt

UniGene Fasta

>sp_v3.0_unigene53765
ATGGGGATTGGTGCCCAAACTTGAAGAGCAGCAAATCAGTGGATCCAAAGTATGTCCTAGCTGTGGACACAAGTTTGAATTCAAGGAGGGTATTCAGGACTGGCCAGGGCTTCCTGCAGGAGTGAAATTTGATCCAACTGATCAAGAACTTCTGGAGCACCTTGAAGCAAAGGTTGAGAAGGATGGCC

Ace file of the UniGene sp_v3.0_unigene53765

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain containing protein 75 n=2 Tax=Arabidopsis RepID=Q9M0F8_ARATH	-	-	5.0e-16	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	NAC domain protein, IPR003441	-	-	4.59e-13	-

Source	Gene names
Sma3	AT4g28500; At4g28500; At4g29230; At5g56620; F20O9.190; GSVIVT00003042001; GSVIVT00016636001; MtrDRAFT_AC158497g28v2; NAC075; NAC105; NAC150; NAC151; NAC154; NAC156; NAC157; OJ1125_C04.22-1; OSJNBb0053D02.2; Os01g0191300; Os05g0563000; OsI_00726; OsI_20979

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29230.1	anac075, NAC075 NAC domain containing protein 75 chr4:14410338-14414956 FORWARD LENGTH=498	2.0e-21	77%
RefSeq	Arabidopsis thaliana	NP_194652.1	NAC domain containing protein 75 [Arabidopsis thaliana]	2.0e-21	77%
RefSeq	Populus trichocarpa	XP_002330524.1	NAC domain protein, IPR003441 [Populus trichocarpa]	4.0e-21	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLI0

Fln msg: Distance to subject end: 315 aas, your sequence is shorter than subject: 62 - 395

Fln protein: WGLVPKLEEQQISGSKVCPSCGHKFEFKEGIQDWPGLPAGVKFDPTDQELLEHLEAKVEKDG

Protein Length: 63

Fln nts: ATGGGGATTGGTGCCCAAACTTGAAGAGCAGCAAATCAGTGGATCCAAAGTATGTCCTAGCTGTGGACACAAGTTTGAATTCAAGGAGGGTATTCAGGACTGGCCAGGGCTTCCTGCAGGAGTGAAATTTGATCCAACTGATCAAGAACTTCTGGAGCACCTTGAAGCAAAGGTTGAGAAGGATGGCC

Fln Alignment:

F585NNT02JEGBT___CPSCGHKFEFKEGIQDWPGLPAGVKFDPTDQELLEHLEAKV
B8LLI0_______________CPNCNYQIDDSHVTQEWPGLPAGVKFDPSEEQLLRHLAAKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain