SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53572

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene53572
ATGGGGATCTGCCTACTCGGTTAAGACCATAGCAGAGGTGTTATAGATCATAAGAAAGAATGGCTCCTCAGGTTGCCAGTGATGATAAGAAAGCCGGGGCAGAAGTCTACTATGGAAGCGAAATTTGCAGGAAGAAAACCATAGAATTGCTTGAACAATCAGGCCTTCCCAATGGCCTCATACTGCTTGATGATATTCAGGAATGTGGTTACGTGAGGGAAACTGGGTTTGTGT

Ace file of the UniGene sp_v3.0_unigene53572

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	175; LOC_Os12g37650; Os11g0683600; Os12g0563600; OsI_36966; OsI_38742; OsJ_34794; POPTRDRAFT_581672;

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56580.1	SVB Protein of unknown function, DUF538 chr1:21198402-21198902 REVERSE LENGTH=166	2.0e-13	53%
RefSeq	Arabidopsis thaliana	NP_564720.1	uncharacterized protein [Arabidopsis thaliana]	3.0e-13	53%
RefSeq	Populus trichocarpa	XP_002330074.1	predicted protein [Populus trichocarpa]	2.0e-15	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLA5

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 58 - 147

Fln protein: MAPQVASDDKKAGAEVYYGSEICRKKTIELLEQSGLPNGLILLDDIQECGYVRETGFV

Protein Length: 59

Fln nts: ATGGGGATCTGCCTACTCGGTTAAGACCATAGCAGAGGTGTTATAGATCATAAGAAAGA_-_ATGGCTCCTCAGGTTGCCAGTGATGATAAGAAAGCCGGGGCAGAAGTCTACTATGGAAGCGAAATTTGCAGGAAGAAAACCATAGAATTGCTTGAACAATCAGGCCTTCCCAATGGCCTCATACTGCTTGATGATATTCAGGAATGTGGTTACGTGAGGGAAACTGGGTTTGTGT

Fln Alignment:

F51TW9002J3UI6___MAPQVASDDKKAGAEVYYGSEICRKKTIELLEQSGLPNGLILLDDIQECGYVRETGFV
A9NLA5_______________MALQLASD-QQAGAEIYHGSEVCKKKCMELLEQVGLPKGLILLDELEECGYIRETGFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain