SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53536

Length: 105 nt

UniGene Fasta

>sp_v3.0_unigene53536
GGTTCATGACTAGAAATCTCATGTATGCAGGTTGAAGAAAACTCTCTATGGATTGAAGCAAGCACCTCGGGCTTGGTATGAGAGGATCGATAGCTATTTGTATGA

Ace file of the UniGene sp_v3.0_unigene53536

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q9FY23_GINBI	-	-	2.0e-08	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Reverse transcriptase	-	-	8.014e-28	-

Source	Gene names
Sma3	VITISV_020406; pol;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Integrase, catalytic core	IPR001584	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 212 aas, your sequence is shorter than subject: 34 - 363

Fln protein: VHD*KSHVCRLKKTLYGLKQAPRAWYERIDSYLY

Protein Length: 35

Fln nts: GGTTCATGACTAGAAATCTCATGTATGCAGGTTGAAGAAAACTCTCTATGGATTGAAGCAAGCACCTCGGGCTTGGTATGAGAGGATCGATAGCTATTTGTATGA

Fln Alignment:

F51TW9002FGACC___VCRLKKTLYGLKQAPRAWYERIDSYL
B8LKV8_______________VYRLKKALNGLKQAPRAWYSKIDSYM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain