SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53460

Length: 448 nt

UniGene Fasta

>sp_v3.0_unigene53460
AGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGTACGCAAAACATACTTGGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGG

Ace file of the UniGene sp_v3.0_unigene53460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases	-	-	2.99878e-43	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Acyl-peptide hydrolase-like	-	-	1.39e-09	-

Source	Gene names
Sma3	CHLREDRAFT_165967; GSVIVT00014756001; GSVIVT00014757001; OSJNBb0024N18.1; Os06g0215300; Os06g0215400; OsI_22153; OsI_22154; OsJ_20588; OsJ_20589; P0537F07.22; P0537F07.23; PHYPADRAFT_189977; POPTRDRAFT_798903; RCOM_1591880; THAPSDRAFT_27377;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	S-adenosylmethionine synthetase	IPR002133	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36210.1	alpha/beta-Hydrolases superfamily protein chr5:14248202-14253272 REVERSE LENGTH=730	69%
RefSeq	Arabidopsis thaliana	NP_198470.3	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002302446.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWZ2

Fln msg: Separated hits, possible frame ERROR between 307 and 310, Distance to subject end: 57 aas, your sequence is shorter than subject: 149 - 721

Fln protein: GSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGTQNIxxKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVK

Protein Length: 150

Fln nts: AGGAAGCACTGGGTATGGCAGGGAGTATCGTGAAAGGCTAAATGGCTCATGGGGTATCGTAGATGTTAATGATTGTTGCAGCTGTGCAGAGTTTCTGGTGACAACAGGGAAGGTAGATGGTGAGAGGCTGTGTGTTACTGGGAGATCGGCTGGAGGCTACACAACGCTGGCTGCACTTGTATTTAGGGAAACATTTAAAGCTGGGGCTTCATTGTTTGGTGTTGCCGACTTGTCACTATTGAAAGCTGATACACACAAGTTTGAATCATATTACACTGACAGTCTTGTTGGTACGCAAAACATACTxxxGAAGGATGAATCATTACTGTATGCACGATCACCCATCAATTATGTTGATAGGCTTTCATGTCCAATAATCTTATTTCAAGGATTAGAAGACAAGGTTGTCCCTCCTGAACAAGCACGTAAGATCTATGCAGCAGTGAAGG

Fln Alignment:

F51TW9002FZXBG___GSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGKVDGERLCVTGRSAGGYTTLAALVFRETFKAGASLFGVADLSLLKADTHKFESYYTDSLVGTQNILxKDESLLYARSPINYVDRLSCPIILFQGLEDKVVPPEQARKIYAAVK
A9NWZ2_______________GSTGYGREYRERLNGSWGIVDVNDCCSCAEFLVTTGRVDGERLCITGRSAGGYTTLAALVFRETFKAGASLFGVADVSLLKADTHKFESYYTDSLVGKDESLxKDESLLYERSPINFVDRLSCPMILFQGLEDKVVPPEQARKIYAAVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain