SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53449

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene53449
ATGGGTTATGTCTATTACTTTAGGATTGGGGTGTAGGATATGTCAGATGGATGTGAAGACAACCTTCCTCAATGATGTGATCGAGGAAGAGGTGTATATTGCGCAACCACAAACTTTTGAGGCATGTGGGAGGGATTTTCATGTATGGAGGTTGAAGAAGGCGCTATATGGTCTC

Ace file of the UniGene sp_v3.0_unigene53449

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB	-	-	4.0e-13	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Reverse transcriptase	-	-	2.646e-17	-

Source	GOs	Term	Type	e value	Identity
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 58 - 363

Fln protein: WVMSITLGLGCRICQMDVKTTFLNDVIEEEVYIAQPQTFEACGRDFHVWRLKKALYGL

Protein Length: 59

Fln nts: ATGGGTTATGTCTATTACTTTAGGATTGGGGTGTAGGATATGTCAGATGGATGTGAAGACAACCTTCCTCAATGATGTGATCGAGGAAGAGGTGTATATTGCGCAACCACAAACTTTTGAGGCATGTGGGAGGGATTTTCATGTATGGAGGTTGAAGAAGGCGCTATATGGTCTC

Fln Alignment:

F51TW9001AJMVS___VMSITLGLGCRICQMDVKTTFLNDVIEEEVYIAQPQTFEACGRDFHVWRLKKALYGL
B8LKV8_______________VLAIAAQHNWKVYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain