UniGene Name: sp_v3.0_unigene53403
Length: 240 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
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>sp_v3.0_unigene53403
A |
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If you push the Download ace button, you will download an ace file of this UniGene.
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] dbj|BAD53067.1| putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] | - | - | 6.0e-20 | 61% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 90% |
Sma3 | Thiamin pyrophosphokinase, putative | - | - | 8.35e-09 | - |
Source | Gene names |
---|---|
Sma3 | AT1G02880; At1g02880; B1157F09.24; GSVIVT00027976001; OSJNBa0052O12.42-1; OSJNBa0090H02.18; Os01g0356500; Os01g0931400; Os05g0367400; OsI_05056; OsJ_01724; OsJ_04650; OsJ_18271; P0025H06.10; P0506E04.20-1; PHYPADRAFT_134959; PHYPADRAFT_145644; POPTRDRAFT_ |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | RNA-directed DNA polymerase activity | GO:0003964 | Molecular Function | 0.0 | - |
Sma3 | thiamine diphosphokinase activity | GO:0004788 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | kinase activity | GO:0016301 | Molecular Function | 0.0 | - |
Sma3 | nucleoside-triphosphatase activity | GO:0017111 | Molecular Function | 0.0 | - |
Sma3 | mismatched DNA binding | GO:0030983 | Molecular Function | 0.0 | - |
Sma3 | RNA-dependent DNA replication | GO:0006278 | Biological Process | 0.0 | - |
Sma3 | mismatch repair | GO:0006298 | Biological Process | 0.0 | - |
Sma3 | thiamine metabolic process | GO:0006772 | Biological Process | 0.0 | - |
Sma3 | thiamine diphosphate biosynthetic process | GO:0009229 | Biological Process | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G02880.3 | TPK1 thiamin pyrophosphokinase1 chr1:643063-644485 REVERSE LENGTH=267 | 1.0e-22 | 56% |
RefSeq | Arabidopsis thaliana | NP_001117219.1 | thiamin pyrophosphokinase1 [Arabidopsis thaliana] | 6.0e-23 | 56% |
RefSeq | Populus trichocarpa | XP_002302706.1 | predicted protein [Populus trichocarpa] | 6.0e-30 | 65% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LN96
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 98 aas, your sequence is shorter than subject: 78 - 230
Fln protein:
L
Protein Length:
79
Fln nts:
A
Fln Alignment:
F51TW9001DA7MP___LDSIRPEVREFYDNLGSTILDESYDQDTTDLHKCIAFIRDCTPDLEKSNLILLVVGALGGRFDHELGKIKSMF
B8LN96_______________LDSIRPEVREFYDNLGSTVLDESYDQDTTDLHKCIAFIRDCTPDLEKSNLILLIVGALGGRFDHELGNINVLY
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain