SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53392

Length: 328 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene53392
GTAAGGAATTACGCCTGGAAGGTTGCGACAGATTGGAATGTTTGCCCGATTCCTTGGGACAATTAAGCCAGCTGTCCATTATGAGAATCAGGAAATGTGTATCCACTACTTACCAGCACAAGTGGTGAAGATGAACAATCTTAGAGAGCTGACAGTGACGCTGTGCCCGTTACGTGAGCTGCCATTCAAAAGGATTGTTGAAGGAGAAAGGAAGATATTGACAGAATTGGAGTCTTCCATTCACAATGTTCAGCAACACCATTGCATGTATCGGCTAGAATGCTTAGAACTAAACCGGACGAAAATATGGGACATATCCTTTCCTGGA

Ace file of the UniGene sp_v3.0_unigene53392 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	3.0e-06	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Separated hits, possible frame ERROR between 98 and 101, Distance to subject end: 149 aas, your sequence is shorter than subject: 109 - 618

Fln protein: KELRLEGCDRLECLPDSLGQLSQLSIMRIRKxxIHYLPAQVVKMNNLRELTVTLCPLRELPFKRIVEGERKILTELESSIHNVQQHHCMYRLECLELNRTKIWDISFPG

Protein Length: 110

Fln nts: GTAAGGAATTACGCCTGGAAGGTTGCGACAGATTGGAATGTTTGCCCGATTCCTTGGGACAATTAAGCCAGCTGTCCATTATGAGAATCAGGAAATGxxxTATCCACTACTTACCAGCACAAGTGGTGAAGATGAACAATCTTAGAGAGCTGACAGTGACGCTGTGCCCGTTACGTGAGCTGCCATTCAAAAGGATTGTTGAAGGAGAAAGGAAGATATTGACAGAATTGGAGTCTTCCATTCACAATGTTCAGCAACACCATTGCATGTATCGGCTAGAATGCTTAGAACTAAACCGGACGAAAATATGGGACATATCCTTTCCTGGA

Fln Alignment:

F51TW9001BO5JP___CD--RLECLPDSLGQLSQLSIMRIRKCxIHYLPAQVVKMNNLRELTVTLCPLRELPFKRIVEGERKILTE--------LESSIHNVQQHHCMYRLECLELNRTKIWDISF
B8LMZ7_______________CDSPELKSLPDSLGQLTQLSTLWVGGCxIQSLPPEVAKMNNLVELRVRECPLRELLLKNQAEGEEETLADPTGRRESNLDSSVANAQQ-QCMYRLGYLQLWQTEISHISF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain