SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53382

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene53382
TACTTTCTCTCCCCGTTTATCAACAGTACCAGCGTCATCATTATCTTCATTAACAAGGAGATTTGGGCTTGCAGGAGGCCTTGCATGGTTCGGATTTCTTGCATTTGGCGTAATCTCTGAGCAAGTCAAGACACGGCTTGAGGTCTCCCAGGAACAACAAAATATAAGAAATATTGATGATGCACAAGAAGTCATCCTTCCGAATGGAATACATTATATTGATCTTCGTGTAGGT

Ace file of the UniGene sp_v3.0_unigene53382

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase, FKBP-type n=2 Tax=Medicago truncatula RepID=Q1SMZ8_MEDTR	-	-	1.0e-09	48%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	FK506 binding protein	-	-	3.906e-08	-

Source	Gene names
Sma3	At1g18170; At1g73655; CHLREDRAFT_139925; F25P22.7; FKB17-2; GSVIVT00017809001; LOC_Os03g50080; MICPUN_72144; MtrDRAFT_AC139526g24v2; Os03g0708500; OsI_13220; PHYPADRAFT_116206; POPTRDRAFT_823269; RCOM_0171180; T10F20.17; VITISV_002168;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	IPR001104	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Protein of unknown function DUF1295	IPR010721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18170.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein chr1:6254291-6255507 FORWARD LENGTH=247	8.0e-14	68%
RefSeq	Arabidopsis thaliana	NP_564048.1	putative FKBP-type peptidyl-prolyl cis-trans isomerase 5 [Arabidopsis thaliana]	1.0e-13	68%
RefSeq	Populus trichocarpa	XP_002318521.1	predicted protein [Populus trichocarpa]	4.0e-13	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1Y6

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 78 - 290

Fln protein: TFSPRLSTVPASSLSSLTRRFGLAGGLAWFGFLAFGVISEQVKTRLEVSQEQQNIRNIDDAQEVILPNGIHYIDLRVG

Protein Length: 79

Fln nts: TACTTTCTCTCCCCGTTTATCAACAGTACCAGCGTCATCATTATCTTCATTAACAAGGAGATTTGGGCTTGCAGGAGGCCTTGCATGGTTCGGATTTCTTGCATTTGGCGTAATCTCTGAGCAAGTCAAGACACGGCTTGAGGTCTCCCAGGAACAACAAAATATAAGAAATATTGATGATGCACAAGAAGTCATCCTTCCGAATGGAATACATTATATTGATCTTCGTGTAGGT

Fln Alignment:

F51TW9001EOC8W___SSLTRRXXXXXXXXXXXXXXXXVISEQVKTRLEVSQEQQNIRNIDDAQEVILPNGIHYIDLRVG
A9P1Y6_______________SSLTRRFGLAGGLAWFGFLAFGVISEQVKTRLELSQEQQNIRDIDGAQEVTLPNGIHYVDLRVG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain