SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53366

Length: 362 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene53366
CCATCACTGGAGCTGGTGGTTTCATTGCCTTCCATATTGCCGGAGATTAAATCTGAAGGGCACTACATTATTGCCTCTGACTGGAAGAAGAACGAACACATGACTGAGGATATGTTCTGCAATGAATTTCATCTCGTGGATTTGAGAGTTATGGACAATTGCTTGGCCGTTACCAAAGGAGTTGACCATGTTTTCAACTTGGCCGCAGACATGGGTGGTATGGGATTCATTCAGTCTAATCACTCTGTTATCATGTACAACAACACCATGATCAGCTTCAACATGCTTGAAGCTGCGCGAATTAATGGTGTTAAAAGGTTAGACCTTGTTTTGTTTCTGCACTCTGCATTGTATTGTTTGTC

Ace file of the UniGene sp_v3.0_unigene53366 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-mannose 3,5-epimerase 1 n=27 Tax=Spermatophyta RepID=GME1_ORYSJ	-	-	1.4013e-45	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	GDP-mannose-3',5'-epimerase	-	-	4.49e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	GDP-mannose 3,5-epimerase.	EC:5.1.3.18	-	9.427e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	9.427e-08	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	9.427e-08	%
Sma3	Metabolic pathways	01100	9.427e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	9.427e-08	%

Source	Gene names
Sma3	At5g28840; CHLREDRAFT_196952; F7P1.20; GALE3; GME; GME-1; GME-2; GSVIVT00020104001; GSVIVT00031181001; LOC_Os10g28200; LOC_Os11g37890; MICPUCDRAFT_46037; MICPUN_80077; MICPUN_92683; OSJNBa0061K21.15; OSTLU_18701; Os10g0417600; Os11g0591100; OsGME; OsI_032

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	GDP-mannose 3,5-epimerase activity	GO:0047918	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G28840.1	GME GDP-D-mannose 3',5'-epimerase chr5:10862472-10864024 REVERSE LENGTH=377	77%
RefSeq	Arabidopsis thaliana	NP_001190417.1	GDP-mannose 3,5-epimerase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002319639.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD9

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 120 - 378

Fln protein: PSLELVVSLPSILPEIKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRLDLVLFLHSALYCL

Protein Length: 121

Fln nts: CCATCACTGGAGCTGGTGGTTTCATTGCCTTCCATATTGCCGGAGATTAAATCTGAAGGGCACTACATTATTGCCTCTGACTGGAAGAAGAACGAACACATGACTGAGGATATGTTCTGCAATGAATTTCATCTCGTGGATTTGAGAGTTATGGACAATTGCTTGGCCGTTACCAAAGGAGTTGACCATGTTTTCAACTTGGCCGCAGACATGGGTGGTATGGGATTCATTCAGTCTAATCACTCTGTTATCATGTACAACAACACCATGATCAGCTTCAACATGCTTGAAGCTGCGCGAATTAATGGTGTTAAAAGGTTAGACCTTGTTTTGTTTCTGCACTCTGCATTGTATTGTTTGTC

Fln Alignment:

F51TW9001CTT2E___ILPEIKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRLDLVLFLHSALYCL
A9NUD9_______________IARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMDNCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-----FFYASSACI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain