SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53365

Length: 431 nt

UniGene Fasta

>sp_v3.0_unigene53365
ATGGGTGTTCCAGAGGGATGCAATAAAGGAAAACAACATCCAAGCACAGACAAGCATGCACTTGACCTTCTGAGATGGTTCGCGAAGTGATGTTCAGTATCGAATCCAAATGGGAGTAGCAAAGAAAATAAAGAATGGTGCACGCCATATTGTACTTGATCGAGCAGAGGAAGCTAGAATGGCTGCTTTTTCAGCATTTAAGTCTCTTGGGTTAAATGTCCCTGTTGCTCTTTCTCAACCTGTTGATGCCAGTTCCTTTGGAGCTTCTCGGAGTGAGGACCACAGTGTGGCTTTGTCTAGTGAAGCAATTGTTGAGAATAATTTTGATGTGAAGATTTTGAATGATAAAGTGTTCAGGGATCCTCGTTCTGGTTTATTGGACATGACTGCTCATACTACTACTGTAGGAGCCTACACTAATGATTGTGAAG

Ace file of the UniGene sp_v3.0_unigene53365

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase theta subunit [Arabidopsis thaliana] dbj\|BAD93700.1\| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gb\|AEE86105.1\| DNA polymerase theta subunit [Arabidopsis thaliana]	-	-	1.0e-10	55%
FL-Next	tr=DNA polymerase I family protein expressed; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	50%

Source	Gene names
Sma3	AT4g32700; At4g32700; F4D11.100; GSVIVT00032488001; LOC_Os12g19370; Os12g0291000; OsI_38041; OsJ_35810; RCOM_0803260; TEBICHI;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	DNA-directed DNA polymerase, family A, palm domain	IPR001098	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA polymerase A	IPR002298	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32700.2	" helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding chr4:15767440-15779185 FORWARD LENGTH=2154"	2.0e-13	55%
RefSeq	Arabidopsis thaliana	NP_001078482.1	DNA polymerase theta subunit [Arabidopsis thaliana]	2.0e-13	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G7I4E3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 834 aas, your sequence is shorter than subject: 143 - 2269

Fln protein: WVFQRDAIKENNIQAQTSMHLTF*DGSRSDVQYRIQMGVAKKIKNGARHIVLDRAEEARMAAFSAFKSLGLNVPVALSQPVDASSFGASRSEDHSVALSSEAIVENNFDVKILNDKVFRDPRSGLLDMTAHTTTVGAYTNDCE

Protein Length: 144

Fln nts: ATGGGTGTTCCAGAGGGATGCAATAAAGGAAAACAACATCCAAGCACAGACAAGCATGCACTTGACCTTCTGAGATGGTTCGCGAAGTGATGTTCAGTATCGAATCCAAATGGGAGTAGCAAAGAAAATAAAGAATGGTGCACGCCATATTGTACTTGATCGAGCAGAGGAAGCTAGAATGGCTGCTTTTTCAGCATTTAAGTCTCTTGGGTTAAATGTCCCTGTTGCTCTTTCTCAACCTGTTGATGCCAGTTCCTTTGGAGCTTCTCGGAGTGAGGACCACAGTGTGGCTTTGTCTAGTGAAGCAATTGTTGAGAATAATTTTGATGTGAAGATTTTGAATGATAAAGTGTTCAGGGATCCTCGTTCTGGTTTATTGGACATGACTGCTCATACTACTACTGTAGGAGCCTACACTAATGATTGTGAAG

Fln Alignment:

F51TW9001C3LA3___GSRSDVQYRIQMGVAKKIKNGARHIVLDRAEEARMAAFSAFKSLGLNVPVALSQPVDASSFGASRSEDHSVALSSEAIVENNF
G7I4E3_______________GTEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARIAAFSAFKSLGYDVP-QFAPPISTAVCNSIRKEVGSSSGSDTADTSHSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain