SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53318

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene53318
GAATTAGTGCCAGCACCTCTCTTACTCAAACCCAAAAAGTTTGGAGGATGCTCCAAGGTCTTGGTGACATAGCATTTGCATTTCCATATACTTCCCTTGTCCTTGAAATTCAGGATACTCTCAAGTCAACACCCCCAGAGAATATAACTATGAAGAAAGCAAATGTGTTCTCACTGAGCATAACAACTACTTTCTATATGCTATGT

Ace file of the UniGene sp_v3.0_unigene53318

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid permease-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z940_PICSI	-	-	3.0e-28	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Amino acid permease	-	-	7.855e-18	-

Source	Gene names
Sma3	24K23.18; AAP1; AAP2; AAP3; AAP4; AAPB; At1g77380; At5g09220; At5g63850; F2P24.9; GSVIVT00015436001; GSVIVT00019314001; GSVIVT00033460001; GSVIVT00036108001; LOC_Os11g09020; LeAAP2; LeAAP3; OSIGBa0132E09-OSIGBa0108L24.20; OSJNBa0011F23.22; OSJNBa0015K02.9

Source	GOs	Term	Type	Identity
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77380.1	AAP3, ATAAP3 amino acid permease 3 chr1:29075201-29077252 REVERSE LENGTH=476	3.0e-21	60%
RefSeq	Arabidopsis thaliana	NP_177862.1	amino acid permease 3 [Arabidopsis thaliana]	4.0e-21	60%
RefSeq	Populus trichocarpa	XP_002300581.1	amino acid permease [Populus trichocarpa]	2.0e-20	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV44

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 68 - 465

Fln protein: ISASTSLTQTQKVWRMLQGLGDIAFAFPYTSLVLEIQDTLKSTPPENITMKKANVFSLSITTTFYMLC

Protein Length: 69

Fln nts: GAATTAGTGCCAGCACCTCTCTTACTCAAACCCAAAAAGTTTGGAGGATGCTCCAAGGTCTTGGTGACATAGCATTTGCATTTCCATATACTTCCCTTGTCCTTGAAATTCAGGATACTCTCAAGTCAACACCCCCAGAGAATATAACTATGAAGAAAGCAAATGTGTTCTCACTGAGCATAACAACTACTTTCTATATGCTATGT

Fln Alignment:

F51TW9001B5C8O___ISASTSLTQTQKVWRMLQGLGDIAFAFPYTSLVLEIQDTLKSTPPENITMKKANVFSLSITTTFYMLC
A9NV44_______________ISTTVSLTRAQKFWRILPALGDIAFAFPFTPLVIEIQDTLKSPPPENKTMRKASLVSMMITASFYMLC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain