SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53302

Length: 452 nt

UniGene Fasta

>sp_v3.0_unigene53302
ATGGGAGTCGAGCCTGCTACCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTACACCCATGTTATCTGCTGCAGGGTCTTTCCGTCCACCATAGATAAGAGGACTCACTGGAATAGGACTGGCCATGGGCTAGCCATTGCTCTGCATGATACTCATTATGTGGTTGCACATTCCCATTATGTACTTACTATGGGAGCCCTGCTTCATCTGCAGGATTTCACTTCCGGGTGGGTAAATAAAATGCCGAACCCTGACTGACACTTTAGGTAAAATCCACGGATCGGGGTGGAAATCGTTCAAGTTAAAAGCTTGCTTGTGCAAACTGGGAATTTCAATAGTGAAACGTGGACTATCGAGTTATCCTATTTGACCCTGGCCTTCCGATAAGTGTAAAATTAAGTACATAAAGGTAGCGCGGTCACTG

Ace file of the UniGene sp_v3.0_unigene53302

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c oxidase subunit 1 (Fragment) n=5 Tax=Pinaceae RepID=Q85QE5_PINBN	-	-	2.0e-09	66%
FL-Next	sp=Cytochrome c oxidase subunit 1; Glycine max (Soybean) (Glycine hispida). Mitochondrion.	-	-	0.0	50%

Source	Gene names
Sma3	cox1; coxI;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	aerobic respiration	GO:0009060	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase, subunit I	IPR000883	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P07506

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 65 aas, your sequence is shorter than subject: 95 - 527

Fln protein: WESSLLPHPYGRAPKGPYQSSPLSGPYTHVICCRVFPSTIDKRTHWNRTGHGLAIALHDTHYVVAHSHYVLTMGALLHLQDFTSGWVNKMPNPD*

Protein Length: 96

Fln nts: ATGGGAGTCGAGCCTGCTACCGCATCCTTATGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCTTACACCCATGTTATCTGCTGCAGGGTCTTTCCGTCCACCATAGATAAGAGGACTCACTGGAATAGGACTGGCCATGGGCTAGCCATTGCTCTGCATGATACTCATTATGTGGTTGCACATTCCCATTATGTACTTACTATGGGAGCCCTGCTTCATCTGCAGGATTTCACTTCCGGGTGGGTAAATAAAATGCCGAACCCTGACTGACACTTTAGGTAAAATCCACGGATCGGGGTGGAAATCGTTCAAGTTAAAAGCTTGCTTGTGCAAACTGGGAATTTCAATAGTGAAACGTGGACTATCGAGTTATCCTATTTGACCCTGGCCTTCCGATAAGTGTAAAATTAAGTACATAAAGGTAGCGCGGTCACTG

Fln Alignment:

F51TW9001CJAHS___VFPSTIDKRTHWNRTGHGLAIALHDTHYVVAHSHYVLTMGALLHLQDFTSGWVNKM
P07506_______________IFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFHYWVGKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain