SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53259

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene53259
ATGGGATGTGCATGGTTAAGAAGACTCCCAAGCCCCAAGTGATGGCGATTTACTATTCAAAGCTAACAAAGATATTTTGGATATCAGAAAGTCATTTGTATCATGGCTATGCATGGTACAAGCTATTTATCCTTCAAAAAGGATACAATAAAAACTTGACCCACAAGGATTTGCAGTTGATGGCATCATCTGTCTTGTTGGCGGCCATTTCTGTTATGCCCTACGATCACAAGCAACATGGAGCTCAC

Ace file of the UniGene sp_v3.0_unigene53259

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana] sp\|Q9LD55.1\|EIF3A_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName:	-	-	1.0e-27	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	eIF3a	-	-	6.859e-14	-

Source	Gene names
Sma3	At4g11420; F25E4.40; GSVIVT00022664001; IF3A; MICPUCDRAFT_46246; MICPUN_94701; Os01g0120800; OsI_00169; OsJ_00175; P0684C01.5-1; PHYPADRAFT_113179; PHYPADRAFT_211874; PHYPADRAFT_215083; POPTRDRAFT_744583; POPTRDRAFT_894911; RCOM_1434190; TIF3A1; eIF3a;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11420.1	EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 eukaryotic translation initiation factor 3A chr4:6947834-6952053 REVERSE LENGTH=987	4.0e-34	67%
RefSeq	Arabidopsis thaliana	NP_192881.1	translation initiation factor eIF-3 subunit 10 [Arabidopsis thaliana]	5.0e-34	67%
RefSeq	Populus trichocarpa	XP_002330181.1	predicted protein [Populus trichocarpa]	7.0e-35	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPG3

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 82 - 386

Fln protein: GMCMVKKTPKPQVMAIYYSKLTKIFWISESHLYHGYAWYKLFILQKGYNKNLTHKDLQLMASSVLLAAISVMPYDHKQHGAH

Protein Length: 83

Fln nts: ATGGGATGTGCATGGTTAAGAAGACTCCCAAGCCCCAAGTGATGGCGATTTACTATTCAAAGCTAACAAAGATATTTTGGATATCAGAAAGTCATTTGTATCATGGCTATGCATGGTACAAGCTATTTATCCTTCAAAAAGGATACAATAAAAACTTGACCCACAAGGATTTGCAGTTGATGGCATCATCTGTCTTGTTGGCGGCCATTTCTGTTATGCCCTACGATCACAAGCAACATGGAGCTCAC

Fln Alignment:

F5X2MQL01AT5FT___MCMVKKTPKPQVMAIYYSKLTKIFWISESHLYHGYAWYKLFILQKGYNKNLTHKDLQLMASSVLLAAISVMPYDHKQHGAH
B8LPG3_______________MCMVKKTPKPQMMAIYYSKLTKIFWISESHLYHAYAWFKLYILQKSYNKNLAQKDLQLMASSVLLAAISIMPYDHK-HGAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain