SustainPineDB

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Assembly info
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53258

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene53258
GACAAAGAAAGATCAGGGCAGCATATCAGTTTTTCCTATACACCTTACTTGGATCTGTTTTTATTGCTATTAGCTATTCCGTTGATTCTCTACCCAAAACAAGGAACCACCGATTTACAAATCTTATTAACCACAGAATTCAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTTTCCCGCTCCTTTCCCCGTCAAAGTTGCCTATGGTACCAGTTCATATCT

Ace file of the UniGene sp_v3.0_unigene53258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 4 (Fragment) n=13 Tax=core eudicotyledons RepID=Q7YA37_ACTCH	-	-	9.0e-15	90%
FL-Next	sp=NADH-ubiquinone oxidoreductase chain 4; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	75%
Sma3	NADH-ubiquinone oxidoreductase chain 4	-	-	6.168e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	8.998e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		8.998e-08	%
Sma3	Metabolic pathways	01100		8.998e-08	%

Source	Gene names
Sma3	AtMg00580; GSVIVT00035662001; MicpuN_mit24; NAD4; ND4; RCOM_2007270; nad4; nd4; orf171; orf288;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	NADH:ubiquinone oxidoreductase	IPR003918	-	-
Sma3	NADH-quinone oxidoreductase, chain M/4	IPR010227	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00580.1	NAD4 NADH dehydrogenase subunit 4 chrM:161693-169674 FORWARD LENGTH=495	3.0e-15	84%
RefSeq	Arabidopsis thaliana	NP_085518.1	NADH dehydrogenase subunit 4 (mitochondrion) [Arabidopsis thaliana]	4.0e-15	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93313

Fln msg: Separated hits, possible frame ERROR between 74 and 103, Distance to subject end: 259 aas, your sequence is shorter than subject: 74 - 495

Fln protein: QRKIRAAYQFFLYTLLGSVFIAIxxxxxxxxxxxGTTDLQILLTTEFSERRQIFLWIAFPAPFPVKVAYGTSSY

Protein Length: 75

Fln nts: GACAAAGAAAGATCAGGGCAGCATATCAGTTTTTCCTATACACCTTACTTGGATCTGTTTTTATTGCTATTAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGAACCACCGATTTACAAATCTTATTAACCACAGAATTCAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTTTCCCGCTCCTTTCCCCGTCAAAGTTGCCTATGGTACCAGTTCATATCT

Fln Alignment:

F5X2MQL01ALH15___QRKIRAAYQFFLYTLLGSVFIAISxxxxxxxxxxGTTDLQILLTTEFSERRQIFLWIAFPAPFPVKV
P93313_______________QRKIKAAYQFFLYTLLGSLFMLLAxxxxxxxxxxGTTDLQILLTTEFSERRQIFLWIAFFASFAVKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain