SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53245

Length: 225 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene53245
AAACGATCATAGGCGAGAGAGGCATCAATCTTAGTGGTGGACAAAAGCAAAGAGTGCAGCTTGCCCGTGCACTTTATCAGGATGCAGACATCTACTTACTTGATGATCCTTTTAGTGCAGTGGATGCTCACACTGGCAGTGAGTTGTTCAAGGAGTACATTTTGGGAGCTTTGGCTATGAAGACTGTGGTCTTCATACAACCCAATCAAGTTGAATTTTTGCCGA

Ace file of the UniGene sp_v3.0_unigene53245 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance protein ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9GRC2_POPTR	-	-	9.0e-29	90%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	40%
Sma3	Multidrug resistance protein ABC transporter family	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.179e-10	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	3.931e-35	-

Source	Gene names
Sma3	At1g04120; At1g30420; At1g71330; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_115938; CHLREDRAFT_119533; CHLREDRAFT_141872; CHLREDRAFT_143900; CHLREDRAFT

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	protein disulfide oxidoreductase activity	GO:0015035	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR014778	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04120.1	ATMRP5, MRP5, ATABCC5, ABCC5 multidrug resistance-associated protein 5 chr1:1064848-1070396 REVERSE LENGTH=1514	2.0e-34	86%
RefSeq	Arabidopsis thaliana	NP_001184906.1	ABC transporter C family member 5 [Arabidopsis thaliana]	2.0e-34	86%
RefSeq	Populus trichocarpa	XP_002301842.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	1.0e-35	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 74 - 1316

Fln protein: TIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYILGALAMKTVVFIQPNQVEFLP

Protein Length: 75

Fln nts: AAACGATCATAGGCGAGAGAGGCATCAATCTTAGTGGTGGACAAAAGCAAAGAGTGCAGCTTGCCCGTGCACTTTATCAGGATGCAGACATCTACTTACTTGATGATCCTTTTAGTGCAGTGGATGCTCACACTGGCAGTGAGTTGTTCAAGGAGTACATTTTGGGAGCTTTGGCTATGAAGACTGTGGTCTTCATACAACCCAATCAAGTTGAATTTTTGCCGA

Fln Alignment:

F5X2MQL01D65OB___TIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFKEYILGALAMKTVVFI
E6Y0T0_______________TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTES-ERVVQEALDRIMVNRTTVIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain