SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53167

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene53167
CCATAGACAAGTTGGTCGATAATAAAAATATCAGCGTTGATAGAATACTCACAAAGACTGCTGACGTGAGTGACTATGAAAACTCTTTCGGATGCAATACAACAATCGTTTCAATGGAGACCTATCGATGTGGTTGTTTGCAATGCTGGGTGGGCGAGAGTTGGATTTATAGATGAAATTCCCATTAAAGATTTGCATGAGACGATTAACACAAATTTATCAGGGATGGTAAACACTCTGCATGTTGCTCTTCGCTTGATGAAGCATCGCACAGTCCAAGCCCATGCCCGAAAAACTCCCCATGTCTGTTGTTCTCGTCAGTT

Ace file of the UniGene sp_v3.0_unigene53167 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adh_short domain containing protein	-	-	0.0001	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase	IPR003560	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 107 - 183

Fln protein: P*TSWSIIKISALIEYSQRLLT*VTMKTLSDAIQQSFQWRPIDVVVCNAGWARVGFIDEIPIKDLHETINTNLSGMVNTLHVALRLMKHRTVQAHARKTPHVCCSRQ

Protein Length: 108

Fln nts: CCATAGACAAGTTGGTCGATAATAAAAATATCAGCGTTGATAGAATACTCACAAAGACTGCTGACGTGAGTGACTATGAAAACTCTTTCGGATGCAATACAACAATCGTTTCAATGGAGACCTATCGATGTGGTTGTTTGCAATGCTGGGTGGGCGAGAGTTGGATTTATAGATGAAATTCCCATTAAAGATTTGCATGAGACGATTAACACAAATTTATCAGGGATGGTAAACACTCTGCATGTTGCTCTTCGCTTGATGAAGCATCGCACAGTCCAAGCCCATGCCCGAAAAACTCCCCATGTCTGTTGTTCTCGTCAGTT

Fln Alignment:

F5X2MQL01CWWXZ___KTLSDAIQQSFQWRPIDVVVCNAGWARVGFIDEIPIKDLHETINTNLSGMVNTLHVALRLMKHRTVQAHAR
B8LPP9_______________ETLADAIEQSFQWRAIDVVVCNAGWAKFGYIDEIPIKDLHATINTNLSGMVNTLHVALRLMKHRSDQEHAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain