SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53128

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene53128
CTGCTGGTCATCCCTCAATAAAAAAGCGAATTGCTGATAGCAAAGATCAGCCATGTAGGCAGTTTACACCATGTGATTGTCAATCCATGTGTGGAAAGCAATGTCCCTGCCTACGTAGTGGGACTTGTTGTGAAAAATACTGTGTTCGAAAGGCTGCAAGAATCGTTTCCGAGGATGTCACTGTGCAAAGNGTCAATGTCGAAGTCGACAATGCCCGTGCTTTGCTGCTGGACGTGAATGCGATCCAGATGTTTGTCGGAATTGTTGGTTGTGGAGATGG

Ace file of the UniGene sp_v3.0_unigene53128

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9I9I5_POPTR	-	-	1.99965e-42	90%
FL-Next	sp=Histone-lysine N-methyltransferase EZA1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	SET domain protein	-	-	5.267e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	4.779e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		4.779e-19	%

Source	Gene names
Sma3	At1g02580; At2g23380; At4g02020; CLF; EMB173; EZ1; EZ2; EZ3; EZA1; F26B6.3; FIS1; GSVIVT00019523001; GSVIVT00028115001; ICU1; LOC_Os03g19480; MEA; MEDEA; MEZ1; MEZ2; MEZ3; Os03g0307800; Os06g0275500; OsI_11249; OsI_22514; OsJ_10569; OsJ_20958; P0038C05.29

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	phosphorylation	GO:0016310	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02020.1	EZA1, SWN, SDG10 SET domain-containing protein chr4:886693-891743 FORWARD LENGTH=856	3.99931e-42	93%
RefSeq	Arabidopsis thaliana	NP_567221.1	histone-lysine N-methyltransferase EZA1 [Arabidopsis thaliana]	4.99983e-42	93%
RefSeq	Populus trichocarpa	XP_002320296.1	SET domain protein [Populus trichocarpa]	9.80909e-45	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZSM8

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 175 aas, your sequence is shorter than subject: 93 - 856

Fln protein: AGHPSIKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYxxSKGCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWLWRW

Protein Length: 94

Fln nts: CTGCTGGTCATCCCTCAATAAAAAAGCGAATTGCTGATAGCAAAGATCAGCCATGTAGGCAGTTTACACCATGTGATTGTCAATCCATGTGTGGAAAGCAATGTCCCTGCCTACGTAGTGGGACTTGTTGTGAAAAATACxxxxxxTCGAAAGGCTGCAAGAATCGTTTCCGAGGATGTCACTGTGCAAAGaGTCAATGTCGAAGTCGACAATGCCCGTGCTTTGCTGCTGGACGTGAATGCGATCCAGATGTTTGTCGGAATTGTTGGTTGTGGAGATGG

Fln Alignment:

F5X2MQL01AVN5I___AGHPSIKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYCxCSKGCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWL
Q9ZSM8_______________AGHPSVWKRIAGGKNQSCKQYTPCGCLSMCGKDCPCLTNETCCEKYCxCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain