SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene53020

Length: 318 nt

UniGene Fasta

>sp_v3.0_unigene53020
TTTTTTTGAAAGGGAGCCGCTCTGGAAGCTACTTCGTATTCGGAACCTCATTATCTCATCATGGATTGGGCATGGACGCTAGTGAAAGAAGGCAGAACAAGTGAAAGGCAGAACCAGTGAAATAATAGAGAGAGAATCCGGCAAAGCGGGGCAGAGAGCATGATGAAGAGATTTGTTTCAGTGGGTACTCTGTGCGCACAGGTTATGGTGGCATTCAGACCTCGAATGGTGGACGCTGTGAGGATGCTGGAGGGTGAGGGCGACATTTCTGAAATTCCAGACAGGCCTTTGCGGCTTATGTTACATGGTCCGTCTCTG

Ace file of the UniGene sp_v3.0_unigene53020

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ser/Thr protein kinase isolog [Arabidopsis thaliana]	-	-	2.0e-13	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	PHYPADRAFT_12516; POPTRDRAFT_1078580;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11050.1	Protein kinase superfamily protein chr1:3681892-3683769 FORWARD LENGTH=625	2.0e-17	48%
RefSeq	Arabidopsis thaliana	NP_172572.1	putative receptor-like protein kinase [Arabidopsis thaliana]	3.0e-17	48%
RefSeq	Populus trichocarpa	XP_002306651.1	predicted protein [Populus trichocarpa]	5.0e-18	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACH5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 25 aas, your sequence is shorter than subject: 106 - 246

Fln protein: FF*KGAALEATSYSEPHYLIMDWAWTLVKEGRTSERQNQ*NNRERIRQSGAESMMKRFVSVGTLCAQVMVAFRPRMVDAVRMLEGEGDISEIPDRPLRLMLHGPSL

Protein Length: 107

Fln nts: TTTTTTTGAAAGGGAGCCGCTCTGGAAGCTACTTCGTATTCGGAACCTCATTATCTCATCATGGATTGGGCATGGACGCTAGTGAAAGAAGGCAGAACAAGTGAAAGGCAGAACCAGTGAAATAATAGAGAGAGAATCCGGCAAAGCGGGGCAGAGAGCATGATGAAGAGATTTGTTTCAGTGGGTACTCTGTGCGCACAGGTTATGGTGGCATTCAGACCTCGAATGGTGGACGCTGTGAGGATGCTGGAGGGTGAGGGCGACATTTCTGAAATTCCAGACAGGCCTTTGCGGCTTATGTTACATGGTCCGTCTCTG

Fln Alignment:

F5X2MQL01BELU4___ALEATSYSEPHYLIMDWAWTLVKEGRTSXXXXXXXXXXXXXXSGAESMMKRFVSVGTLCAQVMVAFRPRMVDAVRMLEGEGDISEIPDRPLRLMLHGPS
D5ACH5_______________ALDTSGKSVPHYLITDWAWSLVKIGRTSEIIEERIRQ-----SEANGEMERFVLVGILCSHVMVAFRPQMVEAVKMLDGVAEIPEIPDRPLPFMLHSPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain