UniGene Name: sp_v3.0_unigene53014
Length: 245 nt
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>sp_v3.0_unigene53014
A |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb|CAB36791.1| putative protein [Arabidopsis thaliana] emb|CAB80034.1| putative protein [Arabid | - | - | 3.0e-23 | 74% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 84% |
Sma3 | Tetratricopeptide-like helical | - | - | 2.505e-09 | - |
Source | Gene names |
---|---|
Sma3 | At1g18485; At1g20230; At1g47580; At1g56690; At2g22070; At2g27610; At3g02010; At3g08820; At3g12770; At3g24000; At3g26782; At3g46790; At3g49170; At3g62890; At4g14850; At4g16835; At4g21065; At4g30700; At4g33170; At4g33990; At5g48910; B1080A02.28; B21F5.9; CR |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | ribosome | GO:0005840 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | nucleotide binding | GO:0000166 | Molecular Function | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | structural constituent of ribosome | GO:0003735 | Molecular Function | 0.0 | - |
Sma3 | protein serine/threonine kinase activity | GO:0004674 | Molecular Function | 0.0 | - |
Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | methyltransferase activity | GO:0008168 | Molecular Function | 0.0 | - |
Sma3 | acireductone synthase activity | GO:0043874 | Molecular Function | 0.0 | - |
Sma3 | metal ion binding | GO:0046872 | Molecular Function | 0.0 | - |
Sma3 | DNA methylation | GO:0006306 | Biological Process | 0.0 | - |
Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
Sma3 | protein phosphorylation | GO:0006468 | Biological Process | 0.0 | - |
Sma3 | metabolic process | GO:0008152 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | L-methionine salvage from methylthioadenosine | GO:0019509 | Biological Process | 0.0 | - |
Sma3 | chloroplast RNA processing | GO:0031425 | Biological Process | 0.0 | - |
Sma3 | polycistronic mRNA processing | GO:0031426 | Biological Process | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G56690.1 | Pentatricopeptide repeat (PPR) superfamily protein chr1:21253817-21255931 FORWARD LENGTH=704 | 2.0e-26 | 76% |
RefSeq | Arabidopsis thaliana | NP_176062.1 | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 3.0e-26 | 76% |
RefSeq | Populus trichocarpa | XP_002323422.1 | predicted protein [Populus trichocarpa] | 4.0e-26 | 76% |
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Fln status: C-terminus
Fln database: coniferopsida.fasta
Fln subject: D5AAE0
Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 73 - 246
Fln protein:
M
Protein Length:
74
Fln nts:
A
Fln Alignment:
F5X2MQL01DMEQC___GKPIRIIKNLRVCGDCHSAMKLISKIVEREIVVRDANRFHHFKNGLCSCGDYW
D5AAE0_______________GLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain