SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52947

Length: 397 nt

UniGene Fasta

>sp_v3.0_unigene52947
ATGGGGAAGGTTGCTTCTCTGTTTTGAGGACAGACTGCCTTAAGCTCTTGTCTTCTTGCGAGTTCTGTGAGAGCGATTTTTAATTTCTGTGTGTCTGGTAAGACGACCGCTGCGTCGCCCACTCAGAGCAAACCAGTTATCTCTTAGATTTCTCTGGGTGTTTTGAGGCGTGGAAAAATGGGAAGAGGAAAGATCGAAATCAAGGCAATCGAGGAATCCCGACTAACAGACAAGTCACCTTTTCCAAGCGTAAAACAGGACTTCAGAAGAAGGCCCATGAGCTTTCAGTCTTGTGTAATGCCCAGGTTGCTCTAATCATCTTCTCTGCAGCTGGGAAAAATTTGAATATTCAAGTTCCAGCATGAGGGAAATAATAGATAGATACCAGAGGACTGAG

Ace file of the UniGene sp_v3.0_unigene52947

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-domain transcription factor n=1 Tax=Selaginella moellendorffii RepID=D8SNH9_SELML	-	-	7.0e-14	82%
FL-Next	tr=MADS-box transcription factor; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	91%
Sma3	AGAMOUS-like protein	-	-	8.084e-24	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGL; AGL1; AGL11; AGL15; AGL31; AGL39; AGL5; AGL9; AGa; AGb; AODEF; AVAG1; AVAG2; AlFL; ApMADS2; At2g42830; At3g58780; At4g09960; At4g18960; At5g13790; At5g51870; BnSHP1; CAG1; CAG2; CAG3; CMB; CUM1; CUM10; CitMADS1; CitM

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	maintenance of floral organ identity	GO:0048497	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51870.3	AGL71 AGAMOUS-like 71 chr5:21085635-21087923 REVERSE LENGTH=219	3.0e-13	74%
RefSeq	Arabidopsis thaliana	NP_001190517.1	protein agamous-like 71 [Arabidopsis thaliana]	4.0e-13	74%
RefSeq	Populus trichocarpa	XP_002311353.1	MIKC mads-box transcription factor ptap1-1 [Populus trichocarpa]	4.0e-13	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SED8

Fln msg: Separated hits, possible frame ERROR between 213 and 219, and possible frame ERROR between 338 and 344, Distance to subject end: 146 aas, your sequence is shorter than subject: 74 - 219

Fln protein: MGRGKIEIKAIxxxPTNRQVTFSKRKTGLQKKAHELSVLCNAQVALIIFSAAGxxxEYSSSSMREIIDRYQRTE

Protein Length: 75

Fln nts: ATGGGGAAGGTTGCTTCTCTGTTTTGAGGACAGACTGCCTTAAGCTCTTGTCTTCTTGCGAGTTCTGTGAGAGCGATTTTTAATTTCTGTGTGTCTGGTAAGACGACCGCTGCGTCGCCCACTCAGAGCAAACCAGTTATCTCTTAGATTTCTCTGGGTGTTTTGAGGCGTGGAAAA_-_ATGGGAAGAGGAAAGATCGAAATCAAGGCAATCGAxxxxxxCCCGACTAACAGACAAGTCACCTTTTCCAAGCGTAAAACAGGACTTCAGAAGAAGGCCCATGAGCTTTCAGTCTTGTGTAATGCCCAGGTTGCTCTAATCATCTTCTCTGCAGCTGGGAxxxxxxTTGAATATTCAAGTTCCAGCATGAGGGAAATAATAGATAGATACCAGAGGACTGAG

Fln Alignment:

F5X2MQL01EX6CF___MGRGKIEIKAIExxPTNRQVTFSKRKTGLQKKAHELSVLCNAQVALIIFSAAGKxxEYSSSSMREIIDRYQRTE
Q9SED8_______________MGRGKIEIKMIExxPTNRQVTFSKRRGGLTKKAQELSVLCNAEVALIVFSNTGKxxQWSSSSMKKVLERYQKSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain