SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52870

Length: 509 nt

UniGene Fasta

>sp_v3.0_unigene52870
TAACAGATTCTCGGGCCCTATTCCTAAAGAGCTAGGGGAGCTGCCAGTTCTGACATATCTGGATCTTTCTGTTAATGCCTTGACAGGAGAAATCCCTCCTGAATTGGGCAATTTGAAGCTTAATAGTTTCAATCTTTCGGATAATCAGCTAATTGGCATTGTTCCTTCTGCTTTCAGTCTCAGTTTTTACAAGTATATTTTGAGAACCATGAATTTGTTTTGTTAGAAGTTGTAATCATGACGTAATAGGGTGCTTTTTAGAACTTAGACGGAGGCTTCGAAGCCATAAAGGAATTCACCTGGGTATCTATCTTCAGTAAGCAGGTCTGCATTGTGAATTTTCATTTGTTCCCTTATGATGCATAGGAGCTAGACAGGGTTTGGACATACAAAATTTGGAAAACCAGAATCTCTTGTGTAAAATCTCTAGTATCCTGAAGCAACTTAGAGTTGTGAAGTCTTTCAAATGAAATAAAGAATTTATAATCAAGATTGTTATCTCAGAACTC

Ace file of the UniGene sp_v3.0_unigene52870

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR receptor-like serine/threonine-protein kinase HSL2 n=2 Tax=Arabidopsis RepID=HSL2_ARATH	-	-	2.0e-14	62%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	60%
Sma3	Chromosome chr4 scaffold_6, whole genome shotgun sequence	-	-	9.027e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.86e-06	-

Source	Gene names
Sma3	AT4G28490; AT5G65710; At4g28490; At5g06940; CLV; F21O9.180; F6H11.160; GSVIVT00010648001; GSVIVT00021114001; GSVIVT00028524001; GSVIVT00032107001; GSVIVT00032109001; GSVIVT00032119001; GSVIVT00032121001; GSVIVT00032125001; GSVIVT00032176001; H0305E08.2; L

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65710.1	HSL2 HAESA-like 2 chr5:26292372-26295440 FORWARD LENGTH=993	7.0e-18	62%
RefSeq	Arabidopsis thaliana	NP_201372.2	LRR receptor-like serine/threonine-protein kinase HSL2 [Arabidopsis thaliana]	1.0e-17	62%
RefSeq	Populus trichocarpa	XP_002313944.1	predicted protein [Populus trichocarpa]	1.0e-14	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 286 aas, your sequence is shorter than subject: 75 - 998

Fln protein: NRFSGPIPKELGELPVLTYLDLSVNALTGEIPPELGNLKLNSFNLSDNQLIGIVPSAFSLSFYKYILRTMNLFC*

Protein Length: 76

Fln nts: TAACAGATTCTCGGGCCCTATTCCTAAAGAGCTAGGGGAGCTGCCAGTTCTGACATATCTGGATCTTTCTGTTAATGCCTTGACAGGAGAAATCCCTCCTGAATTGGGCAATTTGAAGCTTAATAGTTTCAATCTTTCGGATAATCAGCTAATTGGCATTGTTCCTTCTGCTTTCAGTCTCAGTTTTTACAAGTATATTTTGAGAACCATGAATTTGTTTTGTTAGAAGTTGTAATCATGACGTAATAGGGTGCTTTTTAGAACTTAGACGGAGGCTTCGAAGCCATAAAGGAATTCACCTGGGTATCTATCTTCAGTAAGCAGGTCTGCATTGTGAATTTTCATTTGTTCCCTTATGATGCATAGGAGCTAGACAGGGTTTGGACATACAAAATTTGGAAAACCAGAATCTCTTGTGTAAAATCTCTAGTATCCTGAAGCAACTTAGAGTTGTGAAGTCTTTCAAATGAAATAAAGAATTTATAATCAAGATTGTTATCTCAGAACTC

Fln Alignment:

F5X2MQL01B9ED9___NRFSGPIPKELGELPVLTYLDLSVNALTGEIPPELGNLKLNSFNLSDNQLIGIVPSAFSLSFYK
Q19AV8_______________NQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain