SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52864

Length: 426 nt

UniGene Fasta

>sp_v3.0_unigene52864
ATGGGGACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGTATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTGGCAAGAAGGAAGAGGACGGAAAGCATGAAGAGCAGATCACGCAGCCCTCTGCCACAAACGATGAGGCTCAGATTGAGGCTGCATCTTATTATCCAACTCCCCCTCAGCATGGAGAGCATGGAGTAGAGCACCACCATGGTCATGGTCACGAGGGGCAACTTACCCCCGAGGAAGCTGAGCAACAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAGAGGAAGAAGGAC

Ace file of the UniGene sp_v3.0_unigene52864

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydrin 9 protein (Fragment) n=53 Tax=Pinus RepID=B7TG72_PINSY	-	-	3.0e-09	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Dehydrin-like protein	-	-	4.757e-11	-

Source	Gene names
Sma3	Dhn4; dhn-1; dhn1; dhn9;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-
Sma3	response to water	GO:0009415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrin	IPR000167	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAF5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 140 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 117 - 245

Fln protein: SGSTLLNLISLAFSSSNQYGRASAGAPGSRPVRVFGKKEEDGKHEEQITQPSATNDEAQIEAASYYPTPPQHGEHGVEHHHGHGHEGQLTPEEAEQQTHGFDGKASSHPQFQLHLF*

Protein Length: 118

Fln nts: ATGGGGACTGCATTGCATTCCTTTTGATATCTCTGCCGATTATCGTTTCATATAATCTGGATCTACTTTGCTGAATTTAATATCTTTAGCATTTTCAAGTTCGAATCAGTATGGCCGAGCAAGCGCCGGAGCACCAGGATCGCGGCCTGTTCGGGTTTTTGGCAAGAAGGAAGAGGACGGAAAGCATGAAGAGCAGATCACGCAGCCCTCTGCCACAAACGATGAGGCTCAGATTGAGGCTGCATCTTATTATCCAACTCCCCCTCAGCATGGAGAGCATGGAGTAGAGCACCACCATGGTCATGGTCACGAGGGGCAACTTACCCCCGAGGAAGCTGAGCAACAAACACACGGGTTTGATGGGAAAGCTTCATCGCACCCACAGTTCCAGCTCCATCTCTTCTAGTGATGAAGAGGAAGAAGGAC

Fln Alignment:

F5X2MQL01AXEPY___VFGKKEEDGKHEEQITQPSA--TNDEAQIEAASYYPTPPQXXXXXXXXXXXXXXXXQLTPEEAEQQTH-GFDGK
D5AAF5_______________LFGKKEEEGRQDDQITQTPATHTHNEAQTEAASYYPTSPH----EVEHGQGHGYEGQLTPEEAEQQKHKGLVGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain