SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52811

Length: 178 nt

UniGene Fasta

>sp_v3.0_unigene52811
TTATCAAAGCAAAAGCCTTGGGAGTGACTGTTTATTTGCATTAATCCAAAAGACCATGAAAAGCCCATTGAGGAGGTGATAAGGGAGAAGTCAGAGGGAGGTGTGGATTACAGCTTTGAATGCGTTGGAAACACAGATGTATTGTATCAGGCTTTCCTGTCTACTCGCCCTGCATTGG

Ace file of the UniGene sp_v3.0_unigene52811

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase class 8 n=1 Tax=Xenopus laevis RepID=Q4R0Y8_XENLA	-	-	2.0e-09	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	At1g32780; F6N18.16;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32780.1	GroES-like zinc-binding dehydrogenase family protein chr1:11869977-11872595 REVERSE LENGTH=394	2.0e-13	69%
RefSeq	Arabidopsis thaliana	NP_564409.1	alcohol dehydrogenase-like 3 [Arabidopsis thaliana]	2.0e-13	69%
RefSeq	Populus trichocarpa	XP_002317673.1	predicted protein, partial [Populus trichocarpa]	2.0e-12	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 88 aas, your sequence is shorter than subject: 59 - 405

Fln protein: LSKQKPWE*LFICINPKDHEKPIEEVIREKSEGGVDYSFECVGNTDVLYQAFLSTRPAL

Protein Length: 60

Fln nts: TTATCAAAGCAAAAGCCTTGGGAGTGACTGTTTATTTGCATTAATCCAAAAGACCATGAAAAGCCCATTGAGGAGGTGATAAGGGAGAAGTCAGAGGGAGGTGTGGATTACAGCTTTGAATGCGTTGGAAACACAGATGTATTGTATCAGGCTTTCCTGTCTACTCGCCCTGCATTGG

Fln Alignment:

F5X2MQL01DOUG1___CINPKDHEKPIEEVIREKSEGGVDYSFECVGNTDVLYQAFLSTRPAL
A9NZ44_______________CINPKDHEKPIQEVITEKSEGGVDYSFECIGNTDVLYQAFLATRPAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain