SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52792

Length: 181 nt

UniGene Fasta

>sp_v3.0_unigene52792
GATTGATGTTGTTTCCTTGATGAGGAAGAGAGTTGTGGGATATAGCGTGGGTGCCTTGGGAAGACTGTTAAGGTTGAGCTGAATGGACAACGGTTGCCTGTCAAGACTTTTCAAGACTATATTGGCCTATACCTGCAAGCAGCTTCCAAATCGAAGCCAGAGCCTCTTCCAAGAATATATG

Ace file of the UniGene sp_v3.0_unigene52792

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI	-	-	3.0e-14	79%
FL-Next	sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	DNA topoisomerase 2	-	-	5.206e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	8.026e-19	-

Source	Gene names
Sma3	At3g23890; F14O13.7; GSVIVT00028763001; Md49N23_TopII.010; PHYPADRAFT_120620; PHYPADRAFT_134247; TOP2;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23890.1	TOPII, ATTOPII topoisomerase II chr3:8624931-8631106 FORWARD LENGTH=1473	1.0e-13	68%
RefSeq	Arabidopsis thaliana	NP_001118686.1	DNA topoisomerase 2 [Arabidopsis thaliana]	2.0e-13	68%
RefSeq	Populus trichocarpa	XP_002314046.1	predicted protein [Populus trichocarpa]	8.0e-12	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P30182

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1180 aas, your sequence is shorter than subject: 60 - 1473

Fln protein: D*CCFLDEEESCGI*RGCLGKTVKVELNGQRLPVKTFQDYIGLYLQAASKSKPEPLPRIY

Protein Length: 61

Fln nts: GATTGATGTTGTTTCCTTGATGAGGAAGAGAGTTGTGGGATATAGCGTGGGTGCCTTGGGAAGACTGTTAAGGTTGAGCTGAATGGACAACGGTTGCCTGTCAAGACTTTTCAAGACTATATTGGCCTATACCTGCAAGCAGCTTCCAAATCGAAGCCAGAGCCTCTTCCAAGAATATATG

Fln Alignment:

F5X2MQL01CHU6M___GCLGKTVKVELNGQRLPVKTFQDYIGLYLQAASKSKPE-PLPRI
P30182_______________GCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain