SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene52638

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene52638
TATAGAGGAGGCTATAGCCAGAGACATTGTCCAATGAGTGCAAAGGATTGCCGTTGGCAATAAAGGTAGTAGCTGCAGCGATGAGATCCAAAAACNCGAATGATGAGTGGAGTCGTGCTTTGATGATGATGAAAAATGTGGATCCCGCCTTTCCAATCACGTCACGAGACTTATTGATTGCAGAGCTGTATC

Ace file of the UniGene sp_v3.0_unigene52638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NB-ARC domain containing protein	-	-	8.0e-07	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	NB-ARC	IPR002182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR16

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 561 aas, your sequence is shorter than subject: 63 - 966

Fln protein: *RRL*PETLSNECKGLPLAIKVVAAAMRSKNTNDEWSRALMMMKNVDPAFPITSRDLLIAELY

Protein Length: 64

Fln nts: TATAGAGGAGGCTATAGCCAGAGACATTGTCCAATGAGTGCAAAGGATTGCCGTTGGCAATAAAGGTAGTAGCTGCAGCGATGAGATCCAAAAACaCGAATGATGAGTGGAGTCGTGCTTTGATGATGATGAAAAATGTGGATCCCGCCTTTCCAATCACGTCACGAGACTTATTGATTGCAGAGCTGTATC

Fln Alignment:

F51TW9002HDQ5O___LSNECKGLPLAIKVVAAAMRSKNTNDEWSRALMMMKNVDPAFPITSRDLLIAELY
B8LR16_______________IATECQGLPLAINAVAAAMSCKTTNDEWSRALTMMRNADPSFPTTHR-TIDAELY

SSRs (tot: 1)

Start position	End position	Sequence	Length
121	132	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain